Prunus mume (Japanese apricot): 103324624
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Entry
103324624 CDS
T03196
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103324624
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
103324624
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
103324624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
103324624
NCBI-ProteinID:
XP_008224926
LinkDB
All DBs
Position
LG3:1512994..1532958
Genome browser
AA seq
2089 aa
AA seq
DB search
MLVQLPRLTSSLREPFDIDQAYLQRKLILQSQKPRQSSSSVDESELARKIVYRWEEASIE
VRQAYKQFIGAVVELIDGEVPSEEFREVALTVYHLFGRPEEEDNVETNIAGKKLEVQKLL
GHAVSDANVRKVASLAQRLAGMQSSDKGTTLVSEKPVNGTHDNVEFGADLVFHAPARFLV
DVSLEDGELLGEESTGISSSYYEGLYSRGNLNDHHPSTDGQSFNLSWLKDACDQIVTKSR
SQLSRDELAMAICRVLDSDKPGDEIAGVLLDLVGDSAFETVQDLVSHRKELVDAIHHGLL
GLKSDKLSSSSQSRMPSYGTQVTVQTETERQIDKLRRKEEKRQRRGTEYGTDSELAAVNF
SSLLQASERKNPVDDLLALGEGPQSLAVSALPQGTVRKHHKGYEEVIIPPTPTAQMKPGE
KLIEITELDEFAQAAFRGYKSLNRIQSRIFHTVYYTNENILVCAPTGAGKTNIAMVSILH
EIGQHFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSHRLSPLNMTVRELTGDMQLSKNEL
EETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVE
STQTMIRIVGLSATLPNYLEVAQFLRVNPEAGLFFFDSSYRPVPLAQQYIGISEQNFTAR
IELQNEICYKKVVESLRQGYQAMVFVHSRKDTAKTAQKLVELARKFEGLEYFKNDDHPQF
SLIQREVMKSRNKDLVALFEFGVGVHHAGMLRTDRGLTERLFSDGLLKVLVCTATLAWGV
NLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYY
LRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLVYGIG
WDEVVADPSLSLKQRALIADAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVE
TYNEMLRRHMNETEVIDMVAHSSEFENIVVRDEEQNELETLVRSSCPLEVKGGPSNKHGK
ISILIQLYISRGSIDTFSLVSDAAYISASLARIMRALFEICLRKGWSEMSLFMLEYCKAV
DRQVWPHQHPLRQFDRDLSAEIVRKLEERGADLDHLYEMQEKDIGALIRYSPGGRLVKQY
LGYFPWIQLSATVSPITRTVLKVDLVITPDFIWKDRFHGTAQRWWILVEDSENDHIYHSE
LFTLTKRMAKGEPQKLSFTVPIFEPHPPQYYVRAVSDSWLHAEAFYTISFQNLALPEAST
SHTELLDLKPLPVTSLGNSIYEALYRFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKTI
SAELAMLRLFNTQPDMKVIYIAPLKAIVREXXXXXKRRLVSQLGKKMVEMTGDYTPDLMA
ILSADIIISTPEKWDGISRNWHSRAYVKKVGLMILDEIHLLGADRGPILEVIVSRMRYIS
SQTEREVRFVGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPR
MNSMNKPAYAAIGTHSPTKPVLIFVSSRRQTRLTALDLIQFATSDEHPRQFLSMPEEALQ
MVLYQVTDNNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPA
HLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFL
YEPFPVESSLREQLHNHINAEIVSGTICHKEDALHYLTWTYLFRRLMFNPAYYGLDNTEP
EVLSSYLSRLVQNTFEDLEDSGCIKMNEDNVEPTMLGSIASQYYLSYMTVSMFGSNIGSD
TSLEVFLHILSAASEYNELPVRHNEENYNEALSERVRYKVDKDRLDDPHVKANLLFQAHF
SQLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWISSSITCMHLLQMVMQGLWFDRD
SSLWMMPCMNVELADSLSKRGIFSVQQLLYLPKATLQTMIGNFPASKLYQDLQPFPRIEV
KLKLQQKDSGKSLSLDIRLVKTNFRQNKSRAFTPRFPKVKNEAWWLVLGNTSTGELYALK
RVSFSDHLVTHMELPSAPNTLQGMKLTLISDCYLGFEQEHSISELIQRQ
NT seq
6270 nt
NT seq
+upstream
nt +downstream
nt
atgttggttcagcttccgcgcctgaccagctctctgagagagccctttgacatcgaccag
gcctatttgcagcgcaagctcatccttcagagccagaagcctcgccagtcttcgagctca
gttgatgagtcagagcttgcacggaagatagtttatagatgggaagaagcttcgattgaa
gtgcggcaagcttacaagcagtttattggggctgtggtggagttgatagatggagaagtt
ccatccgaagagtttcgtgaggtggcactcaccgtgtaccatctttttggcaggccagag
gaggaagacaatgttgaaacaaatattgccggaaaaaagctggaagtgcaaaaactactt
ggtcacgccgtttcagatgctaacgtgcggaaagttgcctccctagcccagagacttgca
gggatgcagtccagtgataaggggactacacttgtttcagaaaagcctgtaaatgggact
catgacaatgtggaatttggtgctgaccttgttttccatgcaccagctcgatttctggtg
gatgtttctttggaggatggcgagttattgggtgaggaaagcactggaatttcttcttca
tattatgaaggattatatagtcgcggtaacttgaatgatcatcatccttctactgatgga
caaagcttcaatttgagttggttaaaagatgcatgtgatcagatagtaacaaaaagtagg
tcgcagctttctcgagatgaactggctatggccatttgtcgggtgcttgactctgataaa
cctggtgatgagatagcaggtgtcttgttagatcttgttggggatagtgcatttgaaact
gttcaagacctcgtatcacatcgaaaggaacttgttgatgccatccatcatgggttactg
ggactgaaatctgacaaattgtcttcaagctctcaatcacgtatgcctagttatggcaca
caggttactgttcaaacagaaactgaacgacagattgataaacttcggcgcaaagaggaa
aagcgacaaagacgaggaacagaatatggcactgatagtgaactggctgctgtaaatttt
tcttctttactacaagcaagcgaaagaaaaaatcctgttgatgatctcttagcgcttggt
gaagggcctcaatctttagcagtaagtgctcttcctcaaggaactgtgaggaagcatcat
aagggatatgaggaggtcattattcccccaacaccaacagcacaaatgaaacctggagaa
aagctgattgagataacggagttagatgaatttgctcaagctgcttttcgtggatataag
tctttgaaccgtattcagagccgcatatttcatactgtttattacactaatgaaaatata
ctagtttgtgctccaacaggagctggcaaaacaaacatagctatggtttctattctacat
gagattggacagcacttcaaagatggttacttgcataaagatgaatttaagatagtttat
gttgcaccaatgaaggcattagctgcagaagttacatcaacttttagccatcgcttatct
ccattgaatatgactgtgagagaacttactggagacatgcaactttctaagaatgaactt
gaagaaactcagatgatagtgacaacacctgagaaatgggatgtcattactcgcaagagc
agtgacatgtcactttcaatgttggtgaagctcctaattattgatgaagtgcatctatta
aatgatgatagaggccctgtaattgaggcactagttgctcgaactttgcgccaggtggag
tctacacagacaatgatacgcattgtgggcctttcagctactctaccgaactatttagag
gttgcacagtttctgagagtgaatccagaagcaggactcttcttctttgattctagttat
cgcccagtgcccctcgcacagcagtatattggtattagtgagcagaattttacagcccgt
attgaattgcagaatgagatatgctacaagaaggttgttgaatcactcaggcaaggttat
caggcaatggtattcgttcattctcgaaaggacacagcaaaaacagctcagaaattggtt
gaacttgctcgcaagtttgaaggactggagtattttaagaatgatgaccacccacaattt
tcgttgatccagagggaagttatgaagtccagaaacaaagatcttgttgcactttttgaa
tttggagttggagttcatcatgctgggatgttacgtactgatagagggctgactgagcgc
cttttctctgatggactgttgaaggtacttgtttgtacggcaactttggcatggggtgta
aatctaccagctcatactgttgtgataaaggggactcaattatatgatccaaaggctggc
gggtggcgagacctgggcatgctagatgttatgcagatctttggacgggctgggagacct
caattcgacaaaagtggtgaaggcattataattacatctcatgacaaactggcctactat
ttgcggttgctgacaagccaacttcctatagaaagtcagtttattagttccttgaaagac
aatttaaatgcagaggtggcacttggtactgtcaccaatgtcaaggaagcttgtgcatgg
cttggatatacgtaccttttcataagaatgaggctgaaccctttggtgtatggtattggg
tgggatgaggttgttgctgatccttccttgagtttaaagcaaagagctctcatagcagat
gctgcacgtgccctggacaaagcgaaaatgatgcgctttgatgagaaaagtggcaacttt
tattgtacagagcttggtcgaattgcaagccacttttatattcaatattcaagtgttgaa
acatacaatgaaatgttgagacgccacatgaatgagactgaggtaatagacatggtagcc
cactcttctgaatttgaaaatattgttgttcgagatgaggaacagaatgagttagagacg
ttggtgcgatcatcgtgcccattagaagttaaggggggtccttcaaataaacatggaaag
atatccattctcattcagttgtacatatctcgtggctcgattgataccttttcgttggtt
tctgatgctgcatacataagtgcaagcttggcacgcattatgcgggcattattcgagatt
tgtctacgaaaaggctggtctgagatgtcactgttcatgttggaatattgcaaggctgtg
gatcgccaagtttggccccatcagcatcctctcagacaatttgacagagatctttcagca
gaaatagtgcgaaagcttgaagaacgaggggctgacttagatcacctatatgagatgcag
gaaaaagacattggagcactgattcgctattcacctggaggaaggttggtcaagcaatat
ttgggatattttccatggatccagttgtcagcaactgtaagtccaatcaccagaactgtt
ttaaaggtggatttggttattacaccagactttatatggaaagatcgttttcatggcaca
gcccagcgttggtggattctagttgaggattctgagaatgaccacatctaccactcagag
cttttcactttgacaaagcggatggcaaaaggggaacctcagaagctttcattcactgtg
ccaatatttgagccacatccacctcagtattatgttcgtgctgtttctgattcttggttg
catgcagaggctttctacaccatatccttccagaatctagcactgccagaggctagtact
tcacacacagaattgctagatttgaagcctctccctgtgacttcacttggcaacagtatt
tatgaagcgttgtacagattttcacactttaatccaatacaaacacagactttccatgtc
ctgtatcacacagacaataatgttctattaggagctcccactggaagtgggaaaactata
tctgctgagctcgctatgcttcgcctattcaatacccaacctgatatgaaggtaatttac
atagcacctttgaaggctattgttagggaannnnnnnnnnnnnnnaaaagacgtcttgtc
tctcagctagggaaaaagatggttgaaatgaccggagattatactccagatttgatggcc
atattgtcagcggatatcataatatctacacctgagaagtgggatggtatcagtcgtaat
tggcatagtcgagcctatgttaaaaaggttgggcttatgatcttggatgagattcacttg
ttgggagctgaccggggacccatccttgaggttattgtgtcaaggatgagatacatatca
tcacagacagagcgtgaagtacggtttgtaggcctttctacagctttagcaaatgcaggg
gatttggctgattggctgggtgttggggaaatcggactcttcaatttcaaaccaagcgtg
agacctgtacctcttgaagtccatatccagggataccctggaaagttctattgcccaagg
atgaatagcatgaacaagccagcatatgctgcaataggcacccattcacctacgaaacca
gttttaatatttgtttcctctcgtcgacagacaaggcttactgcattggacctcattcag
tttgcgacatcagatgaacatccaaggcagtttcttagcatgccagaagaagccctacag
atggttctttatcaggtcactgataataacctgaggcacactttgcagtttggaattgga
ttacaccatgccggtctgaatgacaaagatagatctctggttgaggagctttttgcaaac
aacaaaattcaggtattggtttgtaccagcacattggcatggggtgtaaaccttccagct
catctggtcattattaagggaacagaatattatgatgggaaaacaaagagatatgttgat
tttccaatcacagatatcttgcaaatgatgggtcgtgctggccgcccacaatttgatcaa
catgggaaagcagtcattcttgttcatgaacccaaaaagagcttctataaaaagttttta
tatgaaccatttcccgttgagagcagtctgagggaacagttgcacaatcacatcaatgct
gagatagtttctggcacaatttgccataaagaggatgcgttgcattatcttacctggaca
tatttatttcgtagactgatgtttaatccagcttactatggcttggacaatactgaacct
gaagttctcagctcttatttgtctaggttagtgcaaaacacatttgaggatctggaagac
agtggatgcatcaagatgaatgaagacaatgtagagccaacgatgctgggttcaatagca
tcccagtattatcttagctacatgactgtatcaatgtttggttcaaacataggatcagat
acatcgcttgaagtcttcttgcatatcctatctgctgcttcggaatataacgaacttcct
gtgcggcataatgaggagaattacaatgaagcattgtctgagagagttcgatataaagtg
gataaggaccgcttagatgatccacatgtcaaagccaatctgctatttcaggcacatttc
tcgcagttagaattaccaatcagtgattacgtcacagacttgaagtcagtattggatcaa
agtatacgaatcatccaggccatgatagatatatgtgctaacagtgggtggatttcaagc
tcaattacttgcatgcatcttctgcaaatggtcatgcagggtttatggtttgatagggat
tcttccttatggatgatgccatgcatgaatgtagaacttgctgactcgctaagcaaaaga
ggaatattcagcgtacagcaactattgtatctccccaaggcaactttgcagaccatgatt
ggaaattttcctgcttcaaaattgtatcaggatctgcagccttttccacgcattgaagtg
aaattaaaacttcagcaaaaggacagcggaaagtctctctctctagacatcagactggtg
aagaccaatttcaggcaaaacaaatcaagagcatttaccccgcgtttccctaaggtgaaa
aacgaagcatggtggttggtccttgggaacacctcaacaggggaattatatgctctgaaa
agagtatctttctctgatcacttggttactcacatggagttaccatcagctcctaatact
ctccaggggatgaaattgactttaatttcagattgttatctgggcttcgagcaagagcac
tctatttcagagcttattcaacggcagtaa
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integrated database retrieval system
