Prunus mume (Japanese apricot): 103324632 Help Entry 103324632         CDS       T03196                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism pmum  Prunus mume (Japanese apricot) Pathway pmum03040   Spliceosome Brite KEGG Orthology (KO) [BR:pmum00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     103324632  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:pmum03019]     103324632    03041 Spliceosome [BR:pmum03041]     103324632 Messenger RNA biogenesis [BR:pmum03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      103324632 Spliceosome [BR:pmum03041]  Complex B   Other components    Prp19-related factors     103324632  Complex C     103324632 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 Suf TPR_15 Mad3_BUB1_I TPR_19 ARM_TT21_C ARM_TT21 NRDE-2 Motif Other DBs NCBI-GeneID:  103324632 NCBI-ProteinID:  XP_008224935 LinkDB All DBs Position LG3:complement(1573830..1579237) Genome browser AA seq 927 aa AA seqDB search MSATSSMSISQELYPSQDDLLYEEELLRNPFSLKLWWRYLIARSESPFKKRFIIYERALK ALPGSYKLWNAYLRERLELVRNLPITHFQYETLNNTFERALVTMHKMPKIWTMYLQTLTE QKLVTRTRRTFDRALCALPVTQHDRIWDPYLKFVSQTGIPIETSLRVYRRYLKYDPTHIE DFIEFLINSSLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTKHATEVSGLNVD AIIRGGIRKFTDEVGRLWTSLADYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYAG FEDSMLVHKMETVDLSDEEEEEEKGVEEDGNEEEEDLRLDVNLSLAEFEKKMLNGFWLHD DKDVDLRLARLEHLMDRRPILANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVR TVDPMKAVGKPHTLWVAFAKLYENHKDIANARVIFDKAVQVNYKTVDNLASLWCEWAEME LRHKNFKGALELMRRATAEPSVEVKRRVAADGNQPVQMKLHKSLRIWTFYVDLEESLGKL ESTRAVYERILDLKIATPQIIINYALLLEEHKYFEDAFKVYEKGTKIFKYPHVKDIWVTY LSKFVKRYGKKELERARQLFEDAVQAAPADAKKPLYLQFAKLEEDYGLAKRAMKVYDEAT KAVPNHEKLSMYEIYIARAAEIFGIPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLG EIDRARGVYIFASQFSDPRSDVDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHF ILPEYMMQKDQRLNMDEAKDKLKQAGVPEDEMAALERQLAPVANGTTTKDGNRKVGFVSA GVESQTDGGIKVAANHEDIELPDASDSEDDEGVEIAQKEVPSAVFGELANKRKEAEKDEG GDGAAVTKDGDSHIGALERIKRLKRGG NT seq 2784 nt NT seq  +upstreamnt  +downstreamnt atgtctgcaacttcgtccatgtcgatctctcaggaattatacccatcccaagacgacctt ctttacgaagaagagcttctccgaaacccctttagcctcaagctatggtggcgttacctc atcgctcgatccgaatctccattcaagaagcgttttataatctacgagcgagcactcaag gcccttcctgggagctacaagctttggaacgcttaccttcgcgaacgcctcgagcttgtt cgcaatttacccatcactcacttccagtatgaaaccctcaacaacacttttgaaagagcc ctggttactatgcacaaaatgcctaaaatttggactatgtacttgcaaactttgacggag cagaagttggtcactcggactcgccggaccttcgacagagctctgtgtgctcttccggtg acgcagcacgaccgcatttgggacccgtacctgaagttcgtgagccaaaccggtatccca attgagacctcgcttcgggtttatcgcaggtatttgaaatatgaccctacccatattgaa gatttcattgagttcttgataaattctagtctttggcaagaggccgccgagaggctggct tcagttttgaatgatgatcagttttattcgataaaggggaaaacgaaacataggctgtgg ctggaattgtgtgatttgcttactaagcatgctacggaggtgtcaggcctcaatgtagat gctattattagaggtgggattaggaaatttacagacgaggtgggacggttatggacctca ctggcggactattacattaggaggaatttgcacgagaaagctagggatatatttgaggag ggtatgactactgtggtaacggtaagagattttagtgtaatttttgattcttatgctggg tttgaagatagtatgcttgtccataagatggagacagtggatttgagtgatgaagaggag gaagaagaaaagggagtagaagaggatggaaatgaggaggaagaagatcttcgattggat gttaacttgtctttggctgagtttgagaagaaaatgcttaatgggttttggttacatgat gataaggatgtagatttgaggttggctcgattggagcatcttatggatagaagacctata ctggctaatagtgttcttttacgacaaaatccccataatgtagagcagtggcaccgaaga gtgaagctctttgagggcaatcccacgaagcagatacttacttacacagaggcggtgagg acagttgatccaatgaaagcggtggggaagccccatacgttgtgggttgcgtttgctaag ttgtacgagaatcacaaagatattgcaaatgcaagagtgatttttgataaagcagttcag gtgaactacaagacagtggataatttggctagtctttggtgtgagtgggcagaaatggaa ttgaggcataagaatttcaaaggagcactggaactaatgaggcgggccaccgcagagcca tccgttgaggtgaaacgcagagtggcggctgatgggaaccaaccggttcagatgaagctg cataagtccttaagaatttggactttttacgtggatttagaggagagcctgggtaaattg gagtccacccgggctgtttatgagaggatcctggatttgaagatagccacgccacaaatc ataatcaattatgcattgcttctggaggagcataaatactttgaagatgctttcaaggtg tatgaaaaaggtaccaaaatatttaagtacccacatgtcaaagacatatgggttacatat ctctctaaatttgtaaagagatatgggaagaaagaactggaacgtgcaagacagctattt gaggatgctgttcaagcggcgcctgctgatgcaaagaaacctctgtatcttcaatttgcg aagctggaggaggattatggtctagcaaagcgcgctatgaaggtctatgatgaagcaact aaggctgttccaaaccatgagaaattgagcatgtatgaaatctacattgcccgtgctgcg gagatatttggcatccccaaaacaagggagatatatgagcaagcaatagaatccggtctt ccagacaaagatgtgaagacaatgtgcttgaagtatgctgagcttgagaagagcttagga gaaattgatcgtgctcggggggtatatatatttgcatcacagttttcggatccacgatct gatgtagatttctggaacaaatggcatgagtttgaggtgcaacatggaaatgaagatacc ttccgagagatgcttcgaattaagcgaagtgtttctgcaagctatagccagacacatttt atactacccgagtatatgatgcaaaaggatcagaggttgaacatggatgaggcaaaagac aagttgaaacaggctggagttcctgaagatgaaatggctgctttagagaggcagttggca ccagtggctaacggtactaccaccaaagatggtaacagaaaagtgggctttgtgagtgct ggagtagaatcacagacggacggagggatcaaagttgctgcaaatcatgaagacattgag ctacccgatgcaagtgattcagaagatgatgaaggggttgaaattgcacaaaaggaggtc ccatctgctgtttttggagagttggctaacaagagaaaggaggctgaaaaagatgagggc ggagatggtgctgctgtgaccaaggacggtgacagccacattggcgcccttgagagaata aaaaggctaaaacgaggcggttga

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