Prunus mume (Japanese apricot): 103324646
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Entry
103324646 CDS
T03196
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
103324646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmum04121
]
103324646
Ubiquitin system [BR:
pmum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
103324646
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
LRR_6
LRR_8
F-box-like
Motif
Other DBs
NCBI-GeneID:
103324646
NCBI-ProteinID:
XP_008224955
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All DBs
Position
LG3:1641411..1645163
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AA seq
568 aa
AA seq
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MDSKIKKVLEQLLSLGLVNSCKDRSSVSLVCKDWYEAERLSRRHVFIGNCYSVSPEIVTR
RFPNIRSVTLKGRPRFSDFNLVPPNWGGDVQPWLEVFASECPLLEELRLKRMTVTDERLE
LLAVSFPEFKALSLLSCDGFSTDGLEAIATHCKNLIELDIQENDIDDKSGDWLSCFPETF
TSLEILNFASLNSNVDFDALERLVSRCKSFKVLKVNKSVTLEQLQSLLTHAPQLLELGTG
SFLQELTASQHSQLERAFSNCKNLHTLSGLWEATALYLPVLYPACANLTFLNLSYATLQS
WDLAKLVAHCPLLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPSAPDGDDIIDGVTESG
FVALSYGCRRLCYVLYFCWQMTNAAIATVAQNCPDITHFRLCIMNPRQPDYLTKEPMDEA
FGAVVKTCSKLQRLSVSGLLTDLTFEYIGKHAQNLEYLSIAFAGESDWGMQCVLDGCPKL
KKLEIRDCPFGDVALLSGLEKYEFMRSVWMSACNVTMNACHSLASERPRLNVEVMKDDGN
DENQADKVYVYRSVAGPRRDAPPFVLTF
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggattcaaaaataaagaaggtgctggagcagctcctgagcctgggactggtaaactcg
tgcaaggaccggagctcggtctcgctggtgtgcaaggactggtacgaagcggagcggttg
tcacgccgccacgtcttcatcggaaactgctactcggtgtcgccggagatcgtgacccgg
cggtttccgaacattcggagcgtgaccctgaaagggaggccgcggttctcggactttaat
ctggtccctccgaattggggcggcgatgttcagccttggcttgaggtgttcgcctccgaa
tgcccacttctggaggagctgaggctgaagaggatgacggtgactgatgagaggcttgag
cttttggctgtttcgtttcccgagttcaaagctctctcgcttctcagctgtgatgggttc
agcactgatggccttgaagccattgccactcactgcaagaatttgattgagctcgacata
caggagaatgacattgatgataaaagtggggactggttaagttgcttccctgaaaccttc
acatcattggaaatactaaactttgccagcctcaatagcaacgttgattttgatgctctt
gagagacttgtaagtaggtgcaaatcattcaaggtgctaaaggttaataaaagtgtaacc
ttggaacaactacaaagtcttcttacccatgctcctcaacttttggagcttggcaccggc
tcatttttgcaagagctcacagcttctcagcattcacaacttgaaagagcatttagcaac
tgtaagaatttgcacaccctctctggcttatgggaagcaacggccctttatctcccagtt
ctgtatcctgcctgtgcaaatctcactttcttgaatttgagttatgctactttgcaaagt
tgggaccttgctaagcttgttgctcattgcccactcctccggcgcctttgggtcctggac
acagtggaagacaaagggttggaggctgttggatctaactgtcctttgcttgaggaactc
cgtgttttcccttctgctcctgacggtgatgatattatcgatggggtgactgaatctggg
tttgttgctctgtcttatggctgccgaagactctgctatgtcctctacttttgttggcag
atgactaatgctgctatagcaaccgttgcacaaaattgccctgatatcacccactttcgt
ctctgcataatgaacccaaggcaacccgattacctaacaaaagagcctatggatgaggct
tttggggcagtggtgaagacgtgctctaaactacagaggctttcagtttcaggtttattg
accgaccttacatttgaatacattgggaaacatgcccaaaatttggaatacctttcaata
gcctttgctggagaaagtgattgggggatgcagtgtgtgctggatggttgtcccaagctc
aagaaacttgagatacgggactgcccatttggggatgtggctttgctctcaggtttagag
aagtatgaatttatgaggtcagtttggatgtcagcctgcaatgtgacaatgaacgcgtgt
cactcattggcaagtgagaggccaagattgaatgttgaggtaatgaaggatgatgggaat
gatgaaaatcaagctgacaaagtctatgtttaccgttctgttgctgggccaagaagggat
gccccgcctttcgttctcacgttttga
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