Prunus mume (Japanese apricot): 103324731
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Entry
103324731 CDS
T03196
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 1
KO
K18998
RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:
3.1.3.16
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pmum01009
]
103324731
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103324731
Enzymes [BR:
pmum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
103324731
Protein phosphatases and associated proteins [BR:
pmum01009
]
HAD phosphatases
Fcp/Scp phosphatases
103324731
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
103324731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
NIF
DSRM_2
Motif
Other DBs
NCBI-GeneID:
103324731
NCBI-ProteinID:
XP_008225045
LinkDB
All DBs
Position
LG3:2039748..2048382
Genome browser
AA seq
959 aa
AA seq
DB search
MYKSVVYKGEELLGEVEIYPEENENKNKNKNLVDELKEIRISYFSQSSERCPPVAVLHTI
SSHGVCFKMESKTSQSQDTPLFLLHSSCVMENKTAVMPLGGEELHLVAMHSRNSDKRYPC
FWGFSVAPGLYNSCLVMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALQRKISSEVDSQ
RISGMLAEIKRYQDDKFILKQYAENDQVVENGRVIKTQSEAVPALSDNHQPIIRPLIRLL
EKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL
LDPDSNLINSNKLLDRIVCVKSGSRKSLFNVFQESLCHPKMALVIDDRLKVWDDRDQPRV
HVVPAFAPYYAPQAEANNAVPVLCVARNVACNVRGGFFREFDDSLLQKIPEVFYEDDIKD
VPSPDVSNYLVSEDDSSALNGNRDPLPFDGITDVEVERRMKEATSAASMVSSVVTSIDPR
LASLQYTVAPSSSTLSLPTTQPSVMSFPSIQFPQAASLVKPLGHVGSTEPSLQSSPAREE
GEVPESELDPDTRRRLLILQHGQDTRDQPPSEPPFPVRPPMQASVPRAQSRPGWFPVEEE
MSPRQLSRMVPKDLPLDPEPVQIEKHRPHHSSFFPKVENSIPSDRILQENQRLPKEAFHR
DDRLRFNHALSGYHSLSGEEIPLSRSSSSNRDVDFESGRAISNAETPAGVLQEIAMKCGA
KVEFRPALVASMELQFYVEAWFAGEKIGEGSGKTRREAHYQAAEGSLKNLANIYLSRVKP
DSVSVHGDMNKFPNVNSNGFAGNLNSFGIQPFPKEESLSSSTSSEPSRPLDPRLEGSKKS
MSSVSTLKELCMMEGLGVVFQPRPPPSTNSVEKDEVHVQVEIDGEVLGKGIGLTWDEAKM
QAAEKALGSLTSTLYAQKRQGSPRSLQGMSSKRMKQEFPQVLQRMPSSARYPKNAPPVP
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgtataagtcggtggtgtataaaggtgaagagttacttggggaggtagaaatataccca
gaagagaacgagaacaagaacaagaacaagaatttggttgatgagttgaaggaaatcaga
ataagctatttttcgcaatcaagtgagagatgtccaccagtggcagttcttcataccata
agctctcatggtgtttgcttcaaaatggagtcaaagacctcgcagtctcaagacacgccg
ctctttcttttgcactcctcgtgtgtcatggagaacaagactgcagtaatgccgctagga
ggggaggagctccatttggttgccatgcactccaggaatagtgataaaaggtatccatgt
ttctggggattcagtgttgcaccaggactctacaattcttgccttgtcatgctgaacctt
agatgtcttggcattgtgtttgatcttgatgaaacactcattgttgcaaatacaatgcgc
tcgtttgaggatcgaattgaggccctacagaggaagataagcagtgaggtagactcacaa
cgcatttctggcatgcttgcagagatcaagcgatatcaagatgacaagtttatattgaag
caatatgctgaaaatgatcaagttgttgaaaacgggagggtgatcaaaactcaatctgag
gctgttccagccttgtctgataatcatcaacctattattcggccacttatacggttactc
gagaagaacattatactgactcgcattaatccacagattcgtgatacaagtgttctcgtg
aggttgagacctgcatgggaggatcttcggagttacttgactgcaagagggcgcaagcgc
tttgaggtttatgtttgcacaatggctgaaagggattatgctttagaaatgtggaggctt
ctggatcctgattcaaatctgataaactcgaacaaattattggatcgcattgtgtgtgtc
aagtctggttcaaggaagtcgttgttcaatgtcttccaagaaagcttatgccatcctaag
atggcattggtaattgatgatcgcttgaaagtgtgggatgacagagatcaacctcgggtg
catgttgttcctgcatttgcgccatactatgctcctcaagctgaggcaaataatgccgtt
cctgtcctgtgtgttgcaagaaacgttgcctgcaatgtcagaggtgggttttttagagaa
tttgatgacagtcttctacaaaagattcctgaagttttctatgaagacgatattaaagat
gtcccttctcctgatgtgagcaattatctagtttcagaggatgattcttctgctttgaat
ggaaacagggaccctcttccttttgatggcataacagatgttgaggttgaaagaagaatg
aaggaagccacctcagctgcttcaatggtatcttcagtagtcactagcatagatccaaga
cttgcttctcttcagtacacagtggctccttcttctagcacactttcactgccaacaact
cagccatcagtgatgtcttttcctagtatacagttccctcaggcagcttcactggttaaa
cctttgggtcatgttggctctacagaaccaagcttgcaaagttctcccgctagagaggag
ggtgaggtacctgaatcggaattagaccctgatacaaggcggaggctgctgattttgcag
catggccaagatacaagagatcaaccaccaagtgagcctccatttcctgtgagacctcca
atgcaagcctctgttccacgagcgcaatcgcgtccaggctggtttccagtggaggaagag
atgagcccacggcaactgagccggatggtacccaaagatcttcctttagatccagaacca
gtgcagattgagaagcatcgacctcatcactcgtcttttttccctaaggttgagaattcg
attccatctgatagaattcttcaagaaaaccagagattgccaaaagaggcatttcataga
gatgatcggttgagattcaaccatgcattgtctggttatcattcattgtcaggtgaggag
attcccttaagtcgatcctcttccagcaacagagatgttgactttgaatctggacgagct
atatcaaatgcagaaactcctgctggagttttacaggaaattgcaatgaagtgtggagcc
aaggtggagtttaggccagctttggttgctagtatggaactgcagttttatgttgaggct
tggtttgctggagagaaaattggtgaaggaagtggtaaaacgagaagggaagctcattac
caggctgctgagggttctctgaaaaatttagccaatatatacctttcccgtgtcaagcct
gattctgtgtccgttcatggggatatgaacaagtttcctaatgttaacagcaatggtttt
gcgggtaatttgaattcttttggtatccagccatttcccaaagaggagtccctgtcatct
tcaacttcatcggagccttctaggccactagatcctaggctggaaggctctaaaaagtca
atgagttcagtgtctacactcaaagaactttgtatgatggagggccttggtgtagttttc
caaccacgacctccaccttcaactaattcagtcgagaaagatgaagttcatgtacaggtt
gaaatagatggagaggttttggggaagggaattggattgacgtgggatgaggctaagatg
caggctgctgaaaaggcactcggaagtctaacatcaacgctatatgctcagaaacgtcag
ggttctccaaggtctttgcaagggatgtccagtaaacgtatgaagcaggagtttccacaa
gttttgcaacgaatgccgtcttctgctagatatccaaaaaatgctccaccagttccctga
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