Prunus mume (Japanese apricot): 103324762
Help
Entry
103324762 CDS
T03196
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03020
RNA polymerase
pmum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103324762
09124 Replication and repair
03420 Nucleotide excision repair
103324762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103324762
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103324762
Enzymes [BR:
pmum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103324762
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
103324762
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
103324762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
103324762
NCBI-ProteinID:
XP_008225092
LinkDB
All DBs
Position
LG3:complement(2200183..2207522)
Genome browser
AA seq
1192 aa
AA seq
DB search
MDEEPEYDDQQYNDDDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQPDFAETTYRIKFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVSKSIVKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST
MFVRMLARTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVSREKRIKYAKEILQKEMLPHVGVGEF
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
GYVQKCVDNGKELNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRKLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRENPEDGGWHDLV
AKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSIFFRSYRDEEKKMGTLVKEDFGRPD
RANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPMAQDEAQGQAASRYTRRDHSI
SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
PWTVEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISRAL
HSCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSF
ECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKDIKPAKDKKKKGA
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggagcccgagtacgacgaccagcagtacaacgacgacgacgaagatgaaatc
acgcaggaggacgcctgggccgtcatctcagcctacttcgaagagaagggtttggtgcgc
caacagctcgactcattcgacgagttcattcagaacacaatgcaggaaattgtcgatgag
tcggccgatatcgagattcgccctgagtcgcagcataacccgggccaccagcctgatttt
gccgagactacatataggattaagttcggtcagatttatttgagtaagcccatgatgacc
gagtctgatggagaaactgcaaccttatttcccaaagctgcaaggttgagaaatctaacg
tactcagcacccttgtatgtggatgtctcaaagagcattgtaaagaaaggacatgatggt
gaagaagtcaccgaaactcaggatttcaccaaagtattcattggaaaggttcctataatg
cttcggtctagttattgcacgttgtaccagaattccgaaaaagatttaacagagctggga
gagtgtccatatgatcaaggtggatattttattataaacgggagtgaaaaggttctgatt
gcccaagagaagatgagcaccaatcatgtctacgtgttcaaaaagaggcagcctaacaag
tatgcctacgtggcggaagttcggtctatggcggagtcccaaaacagaccgcccagtaca
atgtttgtgcggatgcttgctcggactagttctaaagggggttcttctggacaatacatc
cgtgctactcttccatacattcgagctgaaattcctattattattgtgttccgagctctc
gggtttgttgctgataaagacatattagagcatatctgttatgacttctctgatactcag
atgatggagttgcttagaccttctctggaagaagcatttgtgattcaaaatcaacaggtt
gcactcgactatattggaaaaagaggtgcaactgttggtgttagtagagaaaagaggatc
aagtatgcaaaagagatccttcaaaaggaaatgcttccacatgttggtgttggagaattt
tgtgagacaaagaaagcttactattttggatatatcattcacaggcttctactgtgtgca
cttggtcggagggcagaagatgatagggatcattatggcaacaagaggctggatcttgct
ggtcccttactgggaggcttgtttcgaatgttattcaggaagttgactagggatgtgaga
ggttatgtgcaaaagtgtgtcgataatggaaaggaacttaacctgcaatttgccatcaaa
gctaaaacaattactagtggcctcaaatattcacttgctactgggaactgggggcaagca
aatgcagctggtacaagggctggagtgtcacaggtgttaaatcgtttgacatatgcgtcc
accttgtcacacttgagaaggctaaattctcccatagggcgtgaagggaaattggccaaa
ccacggcagttgcataactcgcagtgggggatgatgtgcccagctgaaacacctgaagga
caagcatgtggacttgtaaagaatcttgcgttgatggtatacatcacagtaggatcagct
gcatatccaatattggaatttttggaagaatggggtacagagaattttgaggaaatttcc
cctgccgttattccccaagccacgaaaatttttgttaatggctgttgggttggtatacat
cgtgatcctgaaatgttggtgaaaacattaagaaagctaaggcgacgggttgatgtcaat
actgaagttggggttgtcagagatatccgtcttaaagaattgcggatatatactgattat
ggccgttgcagtcgtccgttattcatcgtggataaacaaaggcttctcataaagaagaaa
gatattcatgcattacagcagagggaaaaccctgaagatggtggctggcatgatcttgta
gcaaagggatttatagaatatattgatacggaagaagaggagactacaatgatttccatg
acaattaatgatcttgtacaagcaaggctcaatcctgaagaggcatattctgacacttac
actcattgtgaaattcatccatcacttattttgggtgtttgtgcttcaattataccattt
cccgatcataatcagtctccacgtaatacgtatcaatctgctatgggcaagcaagctatg
ggaatttatgtcaccaattatcagttccgaatggatacactggcgtatgttctgtactac
cctcagaagccccttgtcactacacgagccatggagcatcttcatttcaggcagcttcca
gctggcatcaatgctattgttgccatttcttgctattctggttataaccaggaagattct
gtcattatgaatcaatcctctatagatcgtggattcttccggtcaatatttttccgctct
tatagggacgaggagaaaaagatggggacccttgtcaaagaggatttcgggcgtccagac
agagcaaatacgatgggcatgcggcatggttcttacgacaagttggatgatgatggtctt
gcacctcctggaactagggtttcaggtgaagatgttatcataggaaagaccactcccatg
gctcaggatgaggcgcaagggcaagctgcttcacgatacacacggcgtgaccatagcata
agcttacgccacagtgaaacagggattgtggatcaggttctgctgacgactaatgctgat
gggttgaggtttgtgaaagtaagggtgagatctgtccggataccacagattggtgataaa
tttagcagtagacatggacagaaggggacagtgggtatgacttatacacaagaagacatg
ccatggactgtggaaggggtcacccccgatattattgtgaacccacatgctattccttct
cgaatgaccattggtcagcttattgagtgtatcatggggaaggttgcagctcacatgggg
aaggaaggagatgcaactccctttacagatgtgactgtggacaatattagcagagctctt
cacagctgtgggtatcaaatgcgtgggtttgagaccatgtataacggccacacaggcagg
cggcttagtgctatgatattccttggccccacatattaccagaggctgaagcatatggtt
gatgacaagatccattcccgtgggcggggtccagtacagatcctcacaaggcagcctgct
gagggacgatctcgtgatggtggtttgcgatttggagaaatggagcgagattgcatgatt
gcccatggcgctgctcactttctgaaagagagattgttcgaccagagtgatgcatatagg
gttcatgtctgtgagcgttgtgggttaatagctattgcaaatctcaagaagaattcattt
gagtgcagaggttgcaagaataaaactgacattgttcaggtatacattccctatgcttgc
aagctgctcttccaagagcttatgtccatggctatagcaccaagaatgctcacaaaggac
atcaagcccgccaaagacaaaaagaagaaaggagcctga
DBGET
integrated database retrieval system
