KEGG   Prunus mume (Japanese apricot): 103324796
Entry
103324796         CDS       T03196                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    103324796
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pmum04121]
    103324796
   03036 Chromosome and associated proteins [BR:pmum03036]
    103324796
Enzymes [BR:pmum01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     103324796
Ubiquitin system [BR:pmum04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    103324796
Chromosome and associated proteins [BR:pmum03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     103324796
    Noncanonical PRC1 (PRC1.1)
     103324796
    Noncanonical PRC1 (PRC1.3/1.5)
     103324796
    Noncanonical PRC1 (PRC1.6)
     103324796
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-RING_5 zf-C3HC4_4 zf-RING_4 zf-UDP zf-RING_6 zf-rbx1 zf-Nse ZNF512_C2HC zf-C3HC4_5 zf-RING_10 DUF4695 zf-RING_11
Other DBs
NCBI-GeneID: 103324796
NCBI-ProteinID: XP_008225125
LinkDB
Position
LG3:2418892..2424612
AA seq 437 aa
MPAQKRTPEPMEDDPLQNHHENSHDHPQDEEESDRSLSPSNEEKDECIIVKLAEIRKEVQ
CPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALI
AAIYPDIDKYEEEELAFHEEEKARNKQIQASIAQTFRRQSEALGRKRTTAKATAAAFMRR
SQGSYRNAHLRGRRNYRNVAEHQGSDDNEDANGNDGGKDSTSGDERTEPRPKRCKRWGGG
RSGSANADGGDENDYELNREIMGASAGLVGSSERLAWGKGGMRSHTRYGSTSGGNGKNAR
NIRLSKLVEYLRNSENHDDELDIHLLLVSFDEQRIPSLQRPYLCCRPTLSVGQLCHYVAL
RTALQADEVELYLVKELHAKFSHSTATNVLISKSVVLDSTKDNLQLLREQETLADLRTHN
LIPGHLLLAYQKKWNSS
NT seq 1314 nt   +upstreamnt  +downstreamnt
atgccggcacagaagcgcaccccagagcctatggaagatgatcctctgcagaaccaccat
gaaaacagccacgaccatccacaagacgaagaggagtccgatcgaagcctttccccgagt
aacgaagagaaagacgaatgtatcatagtgaaattggcagaaattcggaaagaagtccaa
tgccctatctgtttagggatcattcggaaaacaagaacagtgatggaatgcctgcatcgc
ttctgcagggaatgcatcgacaagtccatgcgcctggggaacaatgaatgccctgcatgc
cgcacccattgtgctagtcgtcgctctttgagagatgacccaaactacgatgccttaatt
gcagccatctatccagatattgacaagtatgaggaagaggaactggcttttcatgaagag
gagaaggctcgcaataagcagatccaagcttccattgcccagacatttcgacgacaatct
gaggcactaggaaggaaacgaacaacagctaaagcaactgcagctgcatttatgaggaga
tcacagggtagctatcgaaatgctcatttgagggggagaagaaactatagaaatgttgct
gaacatcaaggttccgatgataacgaggatgcaaatggtaatgatggaggtaaagactca
acttctggtgacgagcgcacagaaccaagaccaaagagatgcaaaagatggggaggaggt
cgatcaggatctgctaatgcagatggtggtgatgaaaatgattatgaattgaacagagaa
attatgggtgcatctgcggggcttgttggcagctcagaaaggcttgcctggggtaaaggt
ggcatgcggagccatacacggtatggcagtacaagtggtggcaatggcaaaaatgccagg
aacatccgcctctctaagttggtggagtatcttcggaactcagaaaaccacgatgatgag
ttggacatccacctcctgcttgtttcttttgatgagcaaagaatacccagtttgcagcgg
ccctatctttgctgcaggcctaccctgtcagttggacaactatgtcactatgtagctctc
cgaactgcactgcaagctgatgaagttgaattgtacttggtgaaagagctgcatgccaaa
ttcagtcattcaactgccacaaatgtcctaatttccaagtctgttgttttagactcaacc
aaagataacctgcaactattaagagaacaagaaacgttggcagaccttagaacacacaat
ctcattcctggtcatctgcttttggcatatcagaagaaatggaactcaagctga

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