Prunus mume (Japanese apricot): 103324854
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Entry
103324854 CDS
T03196
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103324854
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103324854
Spliceosome [BR:
pmum03041
]
Complex C
Other components
Complex C specific factors
103324854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_19
AAA_30
ResIII
AAA_7
nSTAND3
AAA_29
AAA_23
SRP54
AAA_11
Motif
Other DBs
NCBI-GeneID:
103324854
NCBI-ProteinID:
XP_008225190
LinkDB
All DBs
Position
LG3:2634544..2642413
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AA seq
690 aa
AA seq
DB search
MSQFWKPGAEKPRLVDDEEGGVLFFSSPSGYANIERQRQRLPVYKYRTSILYLVETHATT
IIVGETGSGKTTQIPQYLKEAGWADGGRVIACTQPRRLAVQSVASRVAEEMGVKLGEEVG
YTIRFEDVTNTGVTMIKFLTDGVLLREMMNDPLLTKYSVIMIDEAHERSISTDILLGLLK
KIQRRRPELRLIISSATIQAKSMSAFFQTSKRRRRPEGEELGPNMEPAVLSVEGRGFNVQ
IHYVEEPVPDYLRAAVSTVLLIHEKEPMGDILVFLTGQDDIDAAVQLITEEAQNRGRKSS
GLMVLPLYSGLPRSEQELVFTPTPRGKRKVVISTNIAETSITLEGVVYVVDSGFSKQRFY
NPITDIENLVVAPISKASARQRTGRAGRVRPGKCYRLYTEEYFAKEMSAEGIPEIQRSNL
VPCVIQLKALGIDNILGFDWPASPSSEAMIRALEVLYSLGVLDDDAKLTSPTGFQIAEIP
LDPMISKMILASGQLGCSEEMITIAATLSIQSIWVSGWGSQKELDEAKLNFAAAEGDHVS
FLNVYKGFLQSGKSSQWCHKNFVNYQAMKKVLEIREQLRRTAQRIGIVLKSCERDTVVVR
KAITNGFFANACRLEASSHDGKYKTIRGSQAVYIHPSSVLFRVNPKWVLYHSLVSTDKQY
MRNVISIDPSWLTEAAPHFYQHQRLKSMVH
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagttctggaaaccaggggccgagaagcctcgcctcgtcgacgacgaagaggga
ggcgtccttttcttctcttccccttctgggtatgcaaatattgagaggcagaggcagagg
cttcccgtgtacaagtaccgcacatccattctctatttggtggagactcacgccactact
atcatagttggcgaaacgggcagcggaaaaaccactcaaattcctcagtacctcaaagaa
gcaggttgggctgatggtgggcgtgtaatagcatgcacccagccaagaagactggctgtc
cagtcagttgcttcaagggtggctgaagagatgggggtcaagcttggagaggaagttggc
tatactatacgattcgaagatgttacaaatacaggtgtaactatgataaagtttttgact
gatggtgtgttactcagggaaatgatgaatgatcctcttttgactaaatatagtgtcata
atgatagatgaggctcatgaaaggtctatctcaactgacattttattgggtctcctgaaa
aagatccaacgacgccgacctgagctgcgtctgatcatctcatccgccacaattcaagca
aaatcaatgtctgctttctttcagaccagcaaaaggcgtcgcagaccagaaggagaggag
cttggaccaaatatggagcctgctgtcctatcagttgagggtagagggtttaatgtacaa
attcattatgtggaggagcctgtcccggactatcttcgggctgctgtttcaacagtatta
ttgattcatgagaaggaaccaatgggagatattctggtatttcttactggtcaagatgat
attgatgctgctgtccagctgattactgaagaagctcaaaaccgtggaagaaagtcatca
ggattgatggttttgcccctctactctggacttccacgttctgagcaggagttggtgttc
actcctactcctagagggaagaggaaagttgtgatatcaaccaatatagcagagacatcc
ataactttggagggtgttgtctatgttgttgacagtgggttctcaaagcagcgtttctac
aacccgataacagatattgaaaatctggtagttgcgccaatatccaaggcatctgctcga
caaaggactggtagggctggaagagttcggcctgggaaatgttacaggctatatactgaa
gagtattttgcaaaggaaatgtctgctgaggggatcccagagatacaaaggtcaaatctt
gttccctgtgtgattcagttaaaagccttgggaatagataatatcttgggctttgattgg
ccagcatctccatcttctgaggcaatgattcgagcgcttgaagtgctttattcacttgga
gtcctagatgatgatgccaaacttacttcaccgactggatttcaaattgctgagattcca
ttggatccaatgatctcaaaaatgatcttagcgtcaggtcaactggggtgttcagaagag
atgattactattgctgccactctctctattcaatctatctgggtttctggttggggatca
cagaaggaactggatgaagccaagttgaattttgctgctgctgagggtgaccatgtgagt
ttcttaaatgtctacaaaggatttcttcagtctggtaaatcttcgcagtggtgtcataag
aactttgtaaactaccaagccatgaaaaaggttctggaaattagagaacaactcagaaga
acggctcagagaataggcattgtcttgaaatcttgtgaaagagacacggtggtagtgagg
aaggcaattactaatgggtttttcgctaatgcatgtcgtttagaagcatcaagtcacgat
gggaagtacaagactattagaggttctcaagcagtttatattcacccatcatctgtgtta
ttcagagttaatcccaagtgggtattataccattctcttgtctcaactgataagcagtac
atgcggaatgtgatttccatagatccttcttggctcacagaggcagctccacatttttac
caacaccagcgactcaagtcaatggttcactag
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