Prunus mume (Japanese apricot): 103325167
Help
Entry
103325167 CDS
T03196
Name
(RefSeq) splicing factor 1 isoform X1
KO
K13095
splicing factor 1
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103325167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103325167
Spliceosome [BR:
pmum03041
]
Complex A
Other components
Complex A specific factors
103325167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
SF1-HH
KH_1
Motif
Other DBs
NCBI-GeneID:
103325167
NCBI-ProteinID:
XP_008225568
UniProt:
A0ABM0NJ58
LinkDB
All DBs
Position
LG1:734922..740549
Genome browser
AA seq
815 aa
AA seq
DB search
MTAKVDAASSVEPHSVEMSGATISSAPSIGTQKVSMFAAKSGFVIPKNKLSGSLVPIFRG
SKNLGASDAVSGESKKQIQRKTKWGPDLAQDASVRKGRALAYQTRVDQITQQLKSGMSEA
ENDEDLPSAPQDPDHNSFRHQIDREDVEQLELEKREVIGEILKLNPSYKAPPDYKPLLKE
ATVPIPVKEYPRYNFVGLIYGPGSDNQKQLEKETGAKIQVYGTKAGTGEKVEIKPSDGSE
VQSGYEKLYVHISADTFEKVDAAVAVLELLVTSVSGNLASVSGDNPHAPPSQGPDATTPN
MVPTMLNQGIVQPVAGPTQTPPNGQFQYPGPFFSTGPSSTPMNIPGYLPLDSSRPIFNNP
SYQSTSPFNSTHLPSLFGPPPALVSPRQNPPTQVLQHLYMAQTRPGYVGSPRNLSLMSPQ
PSSVQTNISAPLTFMGNQPPPTGQPSNISPFAPSFPQHVSNHPHGPSGNSTGWSSGVPAP
QPGVASMPPPSNISTANMVSSVTFPPGPSTLLSSAPVNHAAPSFTSIPRPQVGIPSTLAA
SMLPMPAVAQPKPFMSPLSGPVPAHSTGPVTSLAPSMQPRVPISVTGSVPNFTPQKPPMM
TAPSPGDFTFQPHRPQNPSFQPVPQPNSHFAAHSASPARPMIPHPSPQAPSFQLPVQNMT
PQLGSEVLSRPQVGDHMGQPPPAHISAVPFARNSTAISVPPRHAAYLDTSPVAPRTPHLP
MRPRNFNPAHQMPNFPIPLPPRPGNHIQIQQNYPAHLTRPEMPQAPNQQFSNNLAFASGK
PAPRPGGQQLYDPFSPTSMSTATQQQGGNPAKMGK
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaaaggttgacgctgcatcttcagttgaacctcacagtgttgagatgtctggg
gcaactatttcatctgcaccatcaattggtactcaaaaggtctctatgtttgctgctaag
tctggatttgttataccgaaaaacaagctgtcgggctcacttgtacccatcttccgtgga
agtaaaaacctaggagccagtgatgcagttagtggagaaagtaagaaacagattcagagg
aaaacaaaatggggccctgatctggcccaagatgcttccgtgagaaagggaagagcctta
gcttatcagactcgggtggatcaaattacacaacagctgaaatctggaatgtcagaggct
gagaatgatgaggacttaccatcagcacctcaagatccagaccacaactcctttaggcat
caaattgacagagaggacgtagaacagttggaacttgaaaagcgagaagtcataggtgaa
atattaaagttgaatccaagttacaaggccccacctgattataaacctttgttgaaagag
gccacagttcctattcctgtgaaagaatatcctagatacaattttgttggcctaatatat
ggtcctggaagtgataatcagaagcaattagaaaaggaaactggagccaagattcaagtc
tatggtaccaaagcagggacaggagagaaggttgaaataaaaccatccgatgggagtgaa
gtccagagtggatatgaaaagttgtatgttcatatatcagcggacacatttgagaaagta
gatgcagcagttgctgtacttgaactgctagtgacttctgtatccggaaatctggcatca
gtttctggtgataatcctcatgctcctcctagtcaaggcccggacgctaccacccccaac
atggttcctactatgttaaaccagggaattgtgcaaccagtggcaggacctacacagact
ccaccaaatgggcagtttcagtaccctggtccatttttctctactggcccctcttccact
ccaatgaatatacctggttaccttccactagattcttcaagaccaattttcaacaatcct
tcctatcaatcaacatcacccttcaactctacacacttgccctcattatttgggcctcca
ccagctcttgtttcccctagacaaaacccaccaacacaagttttgcagcatttgtatatg
gctcagacccgccctggttatgttggctcgccaagaaatctttctttgatgtctccccag
ccttcgtcagttcaaactaatatttcagctccactcacattcatgggaaaccaaccccca
ccaacaggccaaccctctaatatcagtccatttgcgccttcatttcctcaacatgtgtct
aatcatccacatggaccttctgggaactctactggatggtcaagcggagtacctgcacca
caaccaggtgttgcgtctatgccaccaccttcaaatatatcaacggccaatatggtttct
tctgttaccttcccacctgggccttccacactgttatcaagtgctcctgtaaaccatgca
gcaccaagttttacttctattccacggcctcaagtgggaattccttctacattagcagct
tctatgcttccaatgcctgcagttgcacaacctaaaccatttatgagccctttatcaggc
cctgttccagctcattcaacaggaccagttacatctctagccccatctatgcaaccaaga
gtgccaatttctgttactggaagtgtaccgaatttcaccccccaaaaaccaccaatgatg
acagctccaagccctggcgatttcacttttcagcctcaccggccacagaatccatccttc
caaccagttccccagccaaacagtcactttgcagcgcacagtgcttctcctgctagacca
atgattcctcatccatcacctcaggcaccgtctttccagttgcctgtgcaaaatatgact
cctcagctgggaagtgaggtgttatcgaggccacaggttggcgaccacatgggtcaacct
ccaccagctcatatatctgctgttccctttgccagaaattctactgccatctcagttcct
cccagacatgcagcatatctagacacgagtcctgttgcacctaggacgccacacctgcca
atgagaccaaggaacttcaatccagcccaccaaatgcccaattttcccattcctctgccc
ccaaggccgggaaatcatattcaaattcagcaaaattatcctgctcacttgactcgtcct
gagatgccacaggctccaaatcaacagttcagcaacaatcttgcatttgcctctggtaag
ccagcgcctaggcctggaggacagcagctttatgatccgttctcgcccacatccatgtct
actgcaactcaacagcagggaggtaatccagcaaagatgggaaagtag
DBGET
integrated database retrieval system