KEGG   Prunus mume (Japanese apricot): 103325198
Entry
103325198         CDS       T03196                                 
Name
(RefSeq) cullin-4
  KO
K10609  cullin 4
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03420  Nucleotide excision repair
pmum04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    103325198
  09124 Replication and repair
   03420 Nucleotide excision repair
    103325198
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pmum04121]
    103325198
   03400 DNA repair and recombination proteins [BR:pmum03400]
    103325198
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pmum04147]
    103325198
Ubiquitin system [BR:pmum04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     103325198
DNA repair and recombination proteins [BR:pmum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      103325198
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      103325198
Exosome [BR:pmum04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   103325198
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 103325198
NCBI-ProteinID: XP_008225565
LinkDB
Position
LG3:4350229..4358568
AA seq 821 aa
MSLMSHPTKRSSAINNNTISSTSSSLNPSSGPPMKKAKSQAVACSLDPSKNGLHHHHHHH
PHTHPSQDSDNDVVFDPSTMALDEDLKSDDPSSRAVAANLSRKKAQPPQPTKKLVIKLLK
AKPTLPTNFEEETWAKLKSAICAIFLKKPDSCDSEKLYQAVNDLCLHKMGGSLYQRIEKE
CERHIAAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRS
LWDMGLQLFRKHLSLSPEVEHKTVTGLLRLIEKERLGEAVARTLLNHLLKMFTALGIYSE
SFEKPFLECTSEFYAAEGMKYMQQADVPDYLKHVETRLHEEHERCLIYLDASTRKPLVAT
AEKQLLERHIPAILDKGFTLLMDGNRIEDLQRMYTLFSRVNALESLRQALSTYIRRTGQG
MIMDEEKDREMVSSLLEFKASLDTIWEESFFKNEAFCNTIKDAFEHLINLRQNRPAELIA
KFLDEKLRAGNKGTSEEELEGMLDKVLVLFRFIQGKDVFEAFYKKDSASIDAEKSMISKL
KTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPP
MDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVV
LMLFNDAEKLSLQDIKDSTGIEDKELRRTLQSLACGKVRVLQKFPKGRDVEDDDTFTFND
GFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITE
LFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
NT seq 2466 nt   +upstreamnt  +downstreamnt
atgagtttgatgtctcaccccacaaaacgctcctcagccatcaacaacaacaccattagc
agcacctcctcctctctcaacccttcttcaggcccacccatgaaaaaggccaagtctcag
gccgtcgcctgttccctcgatcccagcaagaatggcctccaccaccaccaccaccaccat
ccccacactcacccttctcaggactccgataacgacgtcgtattcgacccctctaccatg
gccctcgacgaagatctcaagtccgacgacccctcttcccgtgccgtcgccgccaatttg
tcccgcaaaaaggcccagccccctcagcctaccaagaagctcgtcatcaagctcctgaaa
gccaaacccacgttgcccacaaattttgaagaggaaacatgggcaaagttgaagtcagcc
atttgcgctatatttttaaagaaacctgattcttgtgactcagagaagctttatcaggct
gttaatgatctttgcctgcacaagatgggaggaagtctttatcaacgaattgaaaaggag
tgtgaaagacacatagctgcagcactgcaatctttggttggccagagtccagacttggtg
gtttttttatcacttgttgagagatgctggcaagatctttgtgaccagatgttgatgatt
cgtggtatagccttgtatcttgatagaacatatgtgaaacaaacaccaaatgtgcgttca
ttgtgggacatgggactgcagcttttccgcaaacatctttctctctctccagaagttgag
cacaaaactgtcacgggcctcctaagactgatcgagaaagaaagattgggtgaagcggtg
gctaggaccctgcttaaccatcttttgaagatgtttacagctttaggaatctactcagaa
agctttgagaagccatttcttgagtgcacttcggaattttatgccgctgaaggtatgaaa
tacatgcagcaagcagatgttccagattacttgaagcatgtggagacaaggttgcatgaa
gaacatgaaagatgtttaatctacctggatgcaagtacaaggaagccattagttgcaaca
gccgaaaagcagcttttagaacgccatatacctgccattctcgacaagggatttacattg
ctgatggatgggaatcgaattgaggatcttcaaaggatgtacactcttttctctagagtc
aatgcccttgaatcattgaggcaagcgcttagcacatacattcggaggacagggcagggc
atgatcatggatgaagaaaaagatagagaaatggtttcttcccttttggaatttaaggct
tctcttgacactatatgggaagaaagctttttcaagaatgaagcattttgcaacaccata
aaggatgcatttgagcatcttattaatctccgtcagaaccgacctgctgagctgattgca
aagtttttggacgagaagcttcgtgctgggaataagggtacttctgaagaggaattggag
ggaatgctggataaagtcttggttttattcaggtttatacaggggaaggatgtatttgaa
gcattttataagaaggatagtgcttctatcgacgcagagaaatctatgatttccaagttg
aagactgagtgtggcagtcagtttacgaacaaactcgaaggaatgtttaaggatattgaa
ctgtcaaaagagataaacgagtccttcaaacaatcatcccaggccaggacaaagctcccg
tcagggattgagatgagtgttcatgtcctaacgactgggtactggccaacatatcctccc
atggatgttagacttcctcatgaattgaatgtctaccaggatatcttcaaagagttttac
ttaagcaagtacagcggtaggcgtttaatgtggcaaaattcattaggtcactgtgtgttg
aaagcagagtttcccaagggcaaaaaggagcttgcagtttctctgtttcagactgttgtg
ttgatgctgtttaatgatgctgagaagctaagccttcaagacattaaggattcaactggc
attgaggacaaggaactgagaagaactctgcagtcccttgcatgtggaaaagttcgcgtc
ctgcaaaagtttcccaaagggagagatgtggaggatgacgatacatttacgttcaatgac
ggatttactgctcctctctaccgcataaaggtgaatgcaatccaaatgaaggaaacagtg
gaggagaacacgagcaccactgaaagagtatttcaagaccgccaatatcaggttgatgct
gccattgttcggataatgaaaactaggaaggtgctgagccacactcttctgataacagaa
ctgttccaacagcttaaatttccgataaagccggcagatttgaagaaaaggattgaaagc
ctgattgacagggagtacctagaacgggacaagaacaaccctcaaatttacaactaccta
gcgtaa

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