Prunus mume (Japanese apricot): 103325217
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Entry
103325217 CDS
T03196
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103325217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103325217
04121 Ubiquitin system [BR:
pmum04121
]
103325217
03036 Chromosome and associated proteins [BR:
pmum03036
]
103325217
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103325217
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
103325217
Ubiquitin system [BR:
pmum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
103325217
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
103325217
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
103325217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_2
BRCT
zf-C3HC4_2
zf-HC5HC2H
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_6
zf-HC5HC2H_2
zf-C3HC4_3
zf-RING_5
RTT107_BRCT_5
zf-RING_10
zf-rbx1
PHD_NSD
zf-Nse
Motif
Other DBs
NCBI-GeneID:
103325217
NCBI-ProteinID:
XP_008225581
UniProt:
A0ABM0NJ64
LinkDB
All DBs
Position
LG3:4708538..4713572
Genome browser
AA seq
1015 aa
AA seq
DB search
METPAHLEKMGRELKCPICLSLLNSAVSLNCNHVFCNSCIVKSMKSGSNCPVCKIPYQRR
EIRPAPHMDNLVGIYKSMEVASGINIFVTQNAPSTKSSDGKLQAQDDDHDEQDIPKHCQD
RDEKQKSLRGKRSRKTKSNLKNSGSLSVKPSFPTKKRVQVPQCPLSETPTRPEKTVGKLM
DERSKHSSTTLKGKPVLNEVGEPMLSPFFWLKDKDEENLSQHTDGDQLTDSPPNVPTFSD
IKDSEDEYSARLTPPGEVHGKASNIADLFDSEMFEWTQRECSPELFQSPSKMQVPDNDDI
DRVQVKELKEISQNKKLDEAHSAKSARSKNSRQSSGNMYFLPDIPPAGTKDDSQVVSNEL
NKQGRQTRNISKRKCTTSHTDPGADVSVNVNSKGSKVFYEEPVCKNNSSSLAKTSKRSKK
EHPSVVVMKPTSENVHVLSTEAETQNNGDDRGITESPTSFKKAGKICNEVNAKSQMHCPV
RSRKQKMVSMPNKMLEEVSEVQKQANKDTTTESSLINLSTVDNKKASEFGNKSRKLPREA
KLCDRELKNNKKAKVSSDGNSKDDTFVRVGEGHGNVNENGNQPTEKIEGNCDVTTDRSPV
QKLPSLTNNLVLQRCEAIPSKIQCAFCLSSEESEASGEIVHYYNGKPVAVDHNGGLKVIH
AHRICTEWAPNVYFEDDTAVNLEAELTRSRRIKCSCCEIKGAALGCYERSCRKSFHVTCA
KLMPQCRWDTDNFVMLCPLHASSKLPNESSESQARRRKSNPRRQTNAEHYKAAVKQDNTM
PPDQKFCGSSKKLVLCCSSLSNAEKESVSGFERLSGLAVLKNWDSSVTHVIASVDENGAC
RRTLKVLMGILEGRWILSMEWINACIEAMKLVNEEPYEINIDIYGIRDGPRLGRLRLQNK
QPKLFDGFKFYFMGDFVPSYKGYLQDLVIAAGGTILHRKPVPEGQKPFSATSPKCQTFII
YSFEQPEQGHPSKGTILDRRQSDAKALASSAGAKAASNSWILNSIAACKLQSFSE
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggagactccggcccacctcgagaaaatgggcagagagctcaagtgccccatttgtttg
agtctgctgaattctgcggtttcacttaattgcaatcatgtcttctgcaactcttgtatt
gtgaaatcaatgaaatcgggttccaattgtcccgtttgtaaaattccatatcagcgcaga
gagattcgtcctgctccacacatggataatttggttggtatttacaaaagcatggaggtt
gcttcaggaattaatatatttgtcactcagaatgcaccctcaactaaatcatcagacgga
aaactgcaagcccaagatgatgatcatgatgagcaagatatccctaaacattgtcaggat
agagatgagaaacagaaatccttaagaggaaaacgatcaaggaaaactaaatccaacctg
aaaaattcgggttctctttcagttaaaccttcatttccaaccaagaaaagggttcaggtt
ccacagtgtcctctttcagaaactcctacacgccctgaaaagacagttggtaaactaatg
gatgaaaggtctaagcacagttcaacaactttaaaggggaagccagttctaaatgaagtg
ggagaaccgatgctttcacctttcttttggttgaaagacaaggatgaagaaaatttgagt
cagcatactgatggtgatcaactcactgatagtcctccaaatgttcctactttcagtgat
atcaaagactcagaagatgaatactctgctagattgaccccaccaggcgaagtgcatgga
aaagcttcaaatattgcagatttatttgatagtgagatgtttgaatggacacaaagagaa
tgctcccctgaactcttccaaagtccttctaagatgcaggttccagacaacgatgatatt
gatagagttcaagtgaaggaactgaaagaaatctcacaaaacaagaaattagatgaagca
cattctgctaaaagtgcaaggtctaaaaattctagacaaagtagtggaaatatgtatttt
ctgccagatattccccctgctggaacgaaagacgatagtcaagttgttagtaatgaattg
aacaagcaaggtaggcagacaaggaatataagtaaaagaaaatgcactacaagtcataca
gatccaggtgctgatgttagtgttaatgttaattcaaaaggatctaaagtattttatgaa
gaaccagtatgtaagaataattctagttctttggccaagacttccaaaaggagtaagaag
gaacatccatctgtggttgtaatgaagccaacatctgaaaatgttcatgtcctctcaaca
gaagctgaaactcaaaataatggtgatgacagggggataactgaatcaccaacttcattt
aagaaggctggaaaaatctgtaacgaggtaaatgccaagagccagatgcactgcccagta
aggtcaagaaagcaaaagatggtctctatgccaaacaaaatgcttgaggaggtatcggaa
gtacagaagcaggcaaataaggatactacaactgagtcgtctcttataaatctctctaca
gttgataacaagaaagcctctgagtttgggaacaaatccagaaaacttccgagggaagcc
aagttatgtgatcgagaattgaagaataacaaaaaggcgaaagtttcctctgatggcaac
tcaaaggatgatacttttgttagggttggagagggtcatgggaatgttaatgaaaatgga
aatcaacccactgaaaagatcgaaggcaattgtgatgtcacaactgatcgatcaccagtg
cagaagcttccttcattgacaaacaatttggtcttgcagagatgtgaggccattcctagt
aaaatccaatgtgctttctgtctttcatcagaagaatcagaggcgtctggagagatagtc
cactattataatggtaagcctgttgctgtggatcacaatggaggactcaaggttattcat
gcacacaggatctgcactgaatgggctcccaatgtctattttgaagatgatactgctgtt
aatcttgaagctgagttaactaggagtcgtagaattaaatgttcttgctgtgaaattaaa
ggagcagctcttgggtgttatgagaggagttgtcgtaagagctttcatgtcacctgtgca
aagttgatgcctcagtgtcgatgggatactgataattttgttatgttatgcccccttcat
gcctcttctaaattgccaaatgaaagctctgaatctcaagcaaggaggaggaagagcaat
cctagaagacaaactaatgctgaacattataaagctgctgttaaacaagacaacaccatg
cctccagatcagaaattttgtggatcatccaagaaattagttctctgttgttcatctctt
tcaaatgcagagaaggaatctgtttctgggtttgaaagattatctggacttgcagtttta
aagaattgggattctagtgtcacccatgttattgcgtcggtcgatgaaaatggagcatgc
agaagaaccctcaaagttttgatgggtatcttggaggggaggtggatcctgagtatggaa
tggattaatgcttgcatagaagccatgaaactagttaatgaggagccttatgaaattaac
atcgacatttatggaatcagggatggtcctcgacttggtagactaagacttcagaacaag
caaccaaagctttttgacggattcaagttttactttatgggagactttgtaccttcatat
aagggttatctacaagacctagtaatagctgctggaggaactattctgcatagaaagcct
gttccggagggccagaaacccttttcagccacttccccaaaatgtcaaaccttcataatt
tacagctttgagcaacccgagcagggtcatcctagcaagggtacaatattggaccgcagg
cagtctgatgcaaaggctttggccagttctgctggagccaaggcagcaagcaattcatgg
attttgaactccattgctgcctgcaagttacaaagtttttctgaatag
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