Prunus mume (Japanese apricot): 103325244
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Entry
103325244 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmum04131
]
103325244
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmum04147
]
103325244
Membrane trafficking [BR:
pmum04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
103325244
Exosome [BR:
pmum04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
103325244
Exosomal proteins of bladder cancer cells
103325244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
TPR_COPA_B
WD40_Gbeta
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_SPT8
NBCH_WD40
WD40_RFWD3
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
ENTH
Zn_ribbon_19
Motif
Other DBs
NCBI-GeneID:
103325244
NCBI-ProteinID:
XP_008225617
UniProt:
A0ABM0NJ98
LinkDB
All DBs
Position
LG3:5020262..5025877
Genome browser
AA seq
1195 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
TSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDIGALRKKTVAPADDILR
LSQMNADFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVLFHARQDIIVSNSEDRSIRVWDATKRTGLQTFRREHDRFWILAAHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDSMFYVKDRFLRFFEFSTQRDTQVIPIRRPG
SSTLNQGAKTLSYSPTENAVLICSETEGGSYELYIIPKDSFGRGDIVQEAKRGIGGPAVF
VARNRFAVLEKSSNQVIVKNLKNEIVKKSALPIVADAIFYAGTGNLLCRAEDRVIIFDLQ
QRIILGELQTPFVRYVVWSNDMESIALLSKHSIVIANKKLVHQCTLHETIRVKSGAWDDN
GVFIYTTLNHIKYCLPNGDNGIIRTLDVPVYITKVYGSTIHCLDRDGKNCAIVVDATEYV
FKLSLLKKRYDQVMSMIKSSELCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALGSGNI
QIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQKTKNFERLSFLYLVTGNLDKLSK
MLKIAEVKNDVMGQFHNALYLGDIRERVKILENAGHLPLAYSTAVVHGLHDIAERLAAEL
GDNVPILPKGKSPSLLMPPTPIICGGDWPLLRVMRGIFEGGLXDIVDVENIPNGDISAVL
EDEEEHEENEEGGWDLEDLELPPEIDTPKTASNARSSVFVAPTPGMPVSQIWTQKSSLAA
EHAAAGNFDIAMRLLNRQLGIKNFAPLRQLFLDLHMGSHTYLRAFSSAPVISVAVERGWS
ESATPNVRGPPALVFKFSELEEKLKAGYKATTTGKFTEALRLLLGILHTIPLIVVDSRRE
VDEVKELIIIVKEYVLGLKMELKRRELKDNPVRQQELAAYFTHCNLQTPHLRLALLNAMS
VCFKAGNLNTAANFARRLLETNPTTENHAKTARQVLQAAEKNMNDATQLNYDFRNPFVVC
GATYVPIYRGQKDVSCPYCSSRFVLGQEGQLCTVCDLAVVGADASGLLCSPTQIR
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgaaattcgagaccaagagtaatcgagtgaaggggctgagctttcacagcaag
aggccatggatcttggccagtctccacagcggtgtgatccagctctgggattaccgaatg
ggcactctcatcgaccgttttgacgagcacgatggccctgtacgtggtgtccatttccac
acctctcagccgcttttcgtctctggaggggatgattacaagatcaaggtgtggaattac
aagctgcataggtgtttgtttacacttcttggacaccttgattacatacgcactgttcaa
ttccatcatgagtacccatggattgtcagtgctagcgatgatcagacaatcagaatatgg
aattggcagtcccgaacttgtatttctgtgctcactggacacaaccattacgtcatgtgt
gccttattccatccaaaggaggatcttgttgtctcagcatccttggatcaaactgttcgt
gtttgggatattggtgccctcaggaaaaagacggttgcccctgcagatgacatcctgcgc
ctgagtcagatgaatgcagatttctttggtggagttgatgctgttgtgaagtatgtcttg
gaaggtcatgatcggggtgttaattgggcatcattccatcccacactccctctgatcgtc
tctggagcagacgatcgacaagtgaaactttggcgaatgaatgatacaaaggcttgggag
gtggacaccttaagggggcacatgaacaatgtatcatgtgttttattccatgcaaggcag
gatattattgtgtccaattcagaggatagaagcatccgagtctgggatgccacaaaacgg
actggtcttcagacatttcgtagagagcatgataggttctggattcttgcagcacatcct
gaaatgaaccttttggctgctggtcatgacagtggcatgatcgtctttaaattggagaga
gaacgtcctgccttttctgttagtggtgattcaatgttctatgttaaagatcgttttctc
cgcttctttgagttctctacccagagagacactcaggttatccctattcgaaggcctggt
tcttccaccttgaatcaaggggctaaaacactatcttatagccctacagaaaatgctgtt
ttgatatgttcagaaacagaagggggttcttatgagctatacattatacccaaagatagc
tttggccggggtgatattgtgcaggaggcaaaaagaggaattggagggccagctgtgttc
gtggctaggaataggtttgcagtgcttgaaaagagcagcaatcaagttatagttaagaac
cttaaaaatgagattgtcaagaagagtgccctacctattgttgctgatgcaatattttat
gctggaactggaaacttgctttgcagggcagaggacagagttattatttttgacctgcag
cagagaattattcttggggagcttcaaactccttttgtaaggtatgttgtttggtcaaac
gatatggaaagcattgctttgctgagcaaacattctattgtgatagccaacaagaagctt
gtgcatcagtgcactctccatgagacaattcgtgtaaagagtggagcctgggatgacaat
ggcgttttcatatatacaaccttgaaccacatcaaatactgccttcccaatggggacaat
ggaatcatcaggaccctagatgttccagtatatataacaaaagtgtatggaagcaccatc
cattgcttggatcgagatgggaagaactgtgccattgttgttgatgcaacagaatatgtt
ttcaagctatccttactgaagaagaggtatgaccaggttatgagcatgattaagagctct
gagctctgtggccaggccatgattgcatatctacagcagaaaggtttccctgaggttgcc
cttcattttgtgaaggatgaaaggactcgcttcaacttggcactagggagtggaaacatc
cagattgctgttgcttctgccaaggaaattgatgagaaagatcactggtatcgtttggga
gtggaggcccttcgccagggtaatgcaggcattgtagaatatgcgtatcagaagacaaag
aattttgagaggctatcattcctctatcttgtgactggaaacttggataaattgtccaaa
atgctgaaaattgctgaagtcaagaatgatgtgatgggtcaattccacaatgctctatat
ttgggtgacatcagagagcgtgttaagatattggagaatgctggtcatttaccccttgct
tatagcacagctgtagttcatggcctccatgatattgcagaacgtttggcagctgaactg
ggagataatgttccgattttacccaaggggaaatctccatctcttttgatgcctccaacc
ccaatcatctgtggtggagattggcccttgttgagggttatgagaggaatatttgagggt
ggtcttntggatattgttgacgtggaaaacattccaaatggagacatcagtgcagtgctg
gaggatgaggaagaacatgaggaaaatgaggagggaggatgggatcttgaagatcttgaa
cttccacctgagattgatactcccaaaactgcaagtaatgcccgttcttctgtgtttgtt
gccccaactcctggtatgcctgtaagtcaaatttggacccagaagtcatctcttgctgct
gaacatgcagcggctgggaatttcgatattgcaatgcgtttgttgaaccggcagctgggt
ataaagaactttgctcccctaagacaattgtttcttgacttacacatgggcagtcatacg
tatctacgtgccttctcgtcagctcctgtgatctctgtggctgttgagaggggatggagt
gagtcagctactcctaatgttaggggtcctcctgctcttgtgtttaaattctcagagctg
gaagagaagcttaaggcgggttacaaggccacaactacggggaaatttacagaggcttta
cgacttctccttggtattctgcatactattcctttgattgtagttgattcaaggagagag
gttgatgaagtaaaagaattaattatcattgtgaaggagtatgttctgggtttgaagatg
gagcttaagaggagggaacttaaggacaatcccgttcgccaacaggagctagcagcttac
ttcacccactgtaaccttcagacgcctcacttgagacttgcattactgaatgccatgagt
gtttgctttaaggctggtaatctcaacacagcagccaactttgccaggcgacttttggag
acaaatcccaccactgaaaaccatgcaaagactgcaagacaagtcctccaggctgccgag
aagaacatgaatgatgcaacccagctaaattacgatttcagaaacccatttgtggtttgt
ggtgcaacatatgtgcctatttaccgtgggcagaaggatgtttcatgcccgtactgcagt
tctcggtttgttctgggccaagaagggcagctctgtactgtttgtgatcttgcagtggtt
ggagcggatgcatctgggttgctctgttctcctacccagataagatga
DBGET
integrated database retrieval system
