Prunus mume (Japanese apricot): 103325250
Help
Entry
103325250 CDS
T03196
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103325250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103325250
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103325250
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103325250
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103325250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
Motif
Other DBs
NCBI-GeneID:
103325250
NCBI-ProteinID:
XP_016648744
LinkDB
All DBs
Position
LG3:4873420..4879685
Genome browser
AA seq
694 aa
AA seq
DB search
MEDSDGDINFDFEGGLDATAAAGPTNPGPPSNSLMQSDSGVAAVDTNPAAAAPQPNQNPN
RSGGRSYRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTN
EDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLNSYNYNTSNKFYQQRN
AGFPQQADKYQSAQGPNSIYQGVVGKPSTGESANVHQQQQVQQTQQQVGHTQTQNLPNGL
VNQANRSAPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSAENVILI
FSVNRTRHFQGCAKMMSRIGGSVSGGNWKYAHGSAHYGRNFSVKWLKLCELSFHKTRHLR
NPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAVSIAAESKREEEKAKGVNPE
NGGENPDIVPFEDNEEEEEEESDDEEESFGPVPGVGNEGRGRGRGGIMWPPHMPLARGGR
PMPGMQGFPPGMMGADAMPYGPAPDGFGMPNPFGVGPRGFNPYGPRFSGDFTGPTPGMMF
RGRPQQPGFPPGGYGMMMGPGRAPFMGGMGVGGANPGRPGRPTGMSPMFPPPSSQNTNRM
QKRDPRGPSNDRNERYSAGSGQGKGQEIPGSAGGPDDEARYQQASKAYREDQYGAGNNSR
NDDSESEDEAPRRSRHGEGKKKGRGSEGDVTSEH
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggaagactcagacggagacatcaacttcgacttcgaggggggcctcgacgccaccgca
gccgcgggccccacaaacccgggtccaccatctaattctctgatgcagtccgactcgggc
gttgcggcggtggacaccaaccctgcagctgcggcgccacaacccaaccagaatcccaac
cggtcgggtgggcggagctaccgccaaacggtgtgccgtcactggctgcgtagcctttgc
atgaagggcgaggcctgtgggttcctccatcaatacgacaagtcacgcatgcctgtgtgc
cgcttcttcaggttgtacggcgagtgcagggagcaggattgcgtgtacaagcacaccaac
gaggacattaaagagtgtaatatgtacaagttagggttttgtccaaatggtcctgattgc
cggtatagacatgcaaagctgcctggacctccacctcctgtggaagaagtccttcagaag
attcagcatttgaattcttataattacaacacctcaaataaattttatcaacaacggaat
gctggctttccccaacaagccgataagtatcagtctgcacaaggccccaattccatctat
caaggtgtggttggaaaaccttcaacaggagagtctgctaatgtccaccagcagcaacag
gttcaacaaacccaacaacaggttggccacacgcagacacaaaatctacccaatggccta
gtcaatcaggcaaatagaagtgcgcctttgcctcaaggaatatctaggtattttattgtt
aaaagttgcaaccgtgaaaatttggaattatctgtacaacaaggagtgtgggcaactcaa
aggagcaatgagtccaaacttaatgaagcttttgactctgctgaaaatgtgattttaatt
ttctcagtcaaccggactcgacatttccagggttgtgcaaagatgatgtccagaattggt
gggtctgttagtggagggaactggaaatatgcacatggatctgcgcattatgggagaaat
ttctctgtcaaatggttaaagctatgtgaactgtccttccacaaaactcgtcatttgagg
aacccctacaatgagaacttaccagtaaagataagtagagattgtcaagagctagagccc
tccattggtgagcagttggcttccttgctttatcttgagccagatagtgaacttatggca
gtttcaattgcggcagagtcaaaacgcgaagaagaaaaagcaaagggagtcaatccggag
aatggtggtgagaacccagacattgtcccatttgaggacaatgaagaggaggaagaggaa
gaaagtgacgatgaggaagagagctttggtccagttccgggggtaggaaatgagggcaga
ggaagaggcagaggaggaatcatgtggccccctcacatgccactagcaagaggtggtaga
cctatgcctgggatgcagggttttcccccaggaatgatgggtgctgatgcaatgccctat
ggacctgcacctgacggatttggtatgccaaatccttttggtgtgggccctcgtggtttc
aatccatatggtcccaggttttctggtgattttacagggcccacgcctggcatgatgttt
cgtgggcgaccacaacaacctggatttccacctggtggttatgggatgatgatgggtcct
ggacgtgcaccatttatgggaggcatgggggttggaggtgcaaatccaggccggcctggt
cggccaactggtatgtctccaatgtttccaccaccatcatctcaaaacactaacaggatg
cagaagagagatccaaggggaccttccaatgatcgaaatgagagatatagtgctggctca
ggccaggggaagggtcaagagattccaggttcagctggtggaccagatgatgaggcacgt
tatcagcaagcatcaaaggcttaccgggaagatcagtacggtgctggtaacaactctaga
aatgatgatagtgaaagtgaggatgaggcaccgaggcggtcaaggcatggagagggaaag
aagaaagggagaggctcagaaggagatgttacctctgagcactag
DBGET
integrated database retrieval system
