Prunus mume (Japanese apricot): 103325674
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Entry
103325674 CDS
T03196
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03013
Nucleocytoplasmic transport
pmum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103325674
03015 mRNA surveillance pathway
103325674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103325674
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103325674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-GeneID:
103325674
NCBI-ProteinID:
XP_008226073
LinkDB
All DBs
Position
LG3:8456880..8463122
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AA seq
395 aa
AA seq
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MAKPSQGRRSPLSGSGSDSSSRSRSRSRSFSGTDSRSSSRSRSRSFSSSSPSRSGSSRSR
SPPSKKSPEVPRRGRSPPPQAKKASPPPRKASPIRESLILHIDQLTRNVHEGHLREIFCN
FGDVVKVELAMDRAVNLPKGFGYVEFKTRADAEKAQLYMDGAQIDGNVIRARFTLPQRQK
GSPPPKPVSTAPKRDAVKTDGVNADKDGPKRPREASPRRRPPLSPRRRSPVARRGGSPRR
PPDSPPRRRAGSPARRGDTSPRRRLASPSRGRSGSPPPRRRSPVRRIRGSPIRRRSPFPP
RRRSPPRRVRSPPRRSPINRRRSRSPNRRLARSRSRSISPRRGRGPPTRRGRSSSYSGSP
SPRKVPRKISRSPRRSLRRRSSSKSSSSSSPPRKP
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccaagccaaggccgtcgctcgccactttcaggctccggttctgactcatcg
tcacgctcccgctcgcgttcgcgctccttctcaggcaccgactcgcgctccagctctcga
tctcgctccaggtccttctcttcctcctctccgtcccggagtggcagctctcgtagccga
agccctccctccaaaaaaagtcctgaagttcctagacgaggtcgttctccaccaccacaa
gctaaaaaggcatctccacccccaaggaaagcttctccaattcgcgagtcacttattctt
cacattgaccagcttacgaggaatgtgcatgaaggccatttacgagaaatattttgtaac
tttggtgatgttgtcaaagtggagctggcaatggatcgtgctgttaatcttccaaaagga
tttggatatgttgagttcaagacgagagcagatgctgaaaaagcacagttatatatggat
ggcgctcaaattgatggtaatgtaatccgagcgaggtttacattacctcagcgtcagaag
ggatcaccaccacctaagcctgtttccactgctccaaagagagatgctgtgaaaactgat
ggtgtcaatgctgacaaagatggaccgaagcgaccaagggaagcttctcctcgtcggagg
ccacctctctcaccacgaaggagatcccctgtagctcgcagaggtggatctccaagacga
ccgccagattctccaccacgtcgtcgtgctggctctcctgctcgtcgtggtgatacttct
ccaaggaggaggcttgcatctccatctagaggtcgttctggatctccgccaccaaggcga
cgttcccctgttagaaggatacgtggcagtcccattcgtagacgctctccttttcctcca
aggcgccgttcacctcctagacgggttcgtagtcctcccagaaggtctccaatcaatcgt
aggcgtagccggtctcctaatcgtaggcttgctcgatcacgatcaaggtcaatctcgccg
cggagaggtcgagggccacctactagacgtgggaggtcgtcatcatactctggatcacct
agtccaaggaaggtaccccgaaagatatctcgtagtccaagaaggtctttgaggagaaga
agcagtagcaagagcagcagcagcagttcacctcctcgtaagccatag
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