Prunus mume (Japanese apricot): 103325718
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Entry
103325718 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103325718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmum03036
]
103325718
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
103325718
SWR1 complex
103325718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
ETC_C1_NDUFA5
Myb_DNA-binding
DBINO
Motif
Other DBs
NCBI-GeneID:
103325718
NCBI-ProteinID:
XP_016648610
UniProt:
A0ABM1LMI3
LinkDB
All DBs
Position
LG3:complement(8778801..8791915)
Genome browser
AA seq
2143 aa
AA seq
DB search
MASKGPRSKLDHETRAKRHKALEAPNEPRRPKAHWDHVLEEMIWLSKDFESERKWKLAQA
KKVALRASKGMLDQATRGEKRMKEEELRLKKVALSISKDVKKFWLKIEKLVLYKHQMELD
EKKKRALDKQLEFLLGQTERYSTMLAENLGDSYKPVQQYPIQNQLSIQCKEMDENDINKS
TEFNADPQSDTVDGDDDYDVQSDDGTEDDECTIEEDEALFTEQERQEELDALQNEVDLPL
EELLKQYPMEKVSPESSPEKGEDVTEMASAGEDHGICPEKGDDSAEMTSVGQDPGTCSEK
VEDDAEMTSVGEDPGMRPEKVEDGAELTSVGKDPGMRPEKVEDGTEMTSVGEDHGGQSDI
FVASKTEKISSDIFTGRRCVESNGGLSTSETHLSDIEINGAKHISEASAQLAKGHVRYDF
NDEHEDGDFILAAGEEKDDETTLSEEEELARADTSDPMDEIALLQKESEVPLEELLARYK
KDSNSDEVADGESEYASALSEGFVDSPSLEDVEPKQHGVCMDEDYDSGEHQPALDSPTEE
QSARIDKISEGGKDSENRLEDAAAAARSAQPTGNTFSTTQVRTKFPFLLKFPLREYQHIG
LDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETE
FLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLIL
DEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKD
WFCNPISGMVEGQEKVNKEVLDRLHNVLRPFILRRLKRDVEKQLPMKHEHVINCRLSRRQ
RNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSYDMAGIYTQL
SSSVCSILSPGPFSAVDLRGLGFLFTHLDFTMTSWESDEAKALATPSSLIKERVELTNLE
YIGGFKHRKKLHGTNIFEEVHKAIMEERLRQAKEHAAATAWWNNLRCNRKPIYSTSLRDL
VTIRHPVFDIHSHKANPLSYMYSSKLADIVLSPVERFQKMIDLVESFLFAIPAARAPPPV
CWCSKSGSSVFQNPVYKQKCTETLSPLLSPLRPAIVRRQVYFPDRRLIQFDCGKLQELAG
LLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPK
IFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISQS
TIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRALPVKNMQKEKNHNTT
EVSLSNADLEAALKHAEDEADYMALKKVEQEEAVDNQEFTEEAIVRLEDDELVNEDDMKV
DETVEQGGWTTSSNKENGITLNGSDSNDERALTVACREDDVDMLDDVKQMAAAAGQEISS
FGNQLRPIDRYAIRFLELWDPIIDKTAVESQVRFEETEWELDRIEKYKEEMEAEIDEDEE
PLVYETWDADFATEAYRQQVEALTQHQLMEELEYEAKVKEDEADENCDPMKXQXXXXXXX
KPKKKSKKAKFKSLKKRSLASELKPVKGDLQVEPMSIDEDSISYEMVTYSDMESPRSIVK
RKRKKAESRPFGEEKTSKKKSKKLKKSTLEICPSEFDTNLSTMEHDEVTESKPSESVVDF
EHKPVSRSKMGGKISITSMPVKRVLMIKPEKLKKGNIWSRDCIPPPDFWLSQEDAILCAV
VHEYGPYWSLVSDILYGMTAGGFYRGRYRHPVHCCERFRELIQRYVLSTPDNPNYEKVNN
IGSGKALLRVTEDNIRMLLNVAAEQPNREFVIQKHFTALLSSVWKVTSRKDRRKNLPSSW
NGLYSGGSFFSSSNQISQTSMKERTERMKLSTFGHGTKLIAAALNDASSRQEDGRVFRPN
LGKDSGTDAERLDITLEFEGEKDDSMDALPSVINLSVSDSDPLPLLSQATEDHHLRNSSN
DQCEDSCDINLAENRFRTATRTCIEDTMGWAASAFPTNDIRSRSVSKPPTTGKHKLVFSD
SVRPSKSKIRKSSVEHGEMRSFITEQVFQPLPMAAPMNPIPRFDLNMPVNEDVGIDDLED
NSYSYIDESLLETEDFGVLPHEYVPGLIGGLDDELLPEYIDIG
NT seq
6432 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaaaggtccaaggtcgaagcttgatcatgagaccagagctaaacgccacaag
gcccttgaagctccgaatgaacctcgtcggccaaaggctcattgggatcatgttttagag
gagatgatatggctttccaaggactttgagtcagagagaaaatggaaattagctcaggcg
aagaaggttgctttaagagccagcaaaggcatgctagatcaagctacgaggggagaaaaa
agaatgaaggaagaagagctgcggttaaagaaggttgccctcagtatttcaaaagatgtg
aagaagttctggctgaaaatagagaagctggtgctttacaagcatcagatggaacttgat
gagaaaaagaaaagggcacttgataagcagcttgagttccttctagggcaaactgagagg
tactcaacaatgttggcagaaaatcttggggacagttacaagcctgtgcagcaatatccc
atacaaaatcaactgagtattcaatgcaaagagatggatgaaaatgatattaacaaatca
actgaatttaatgccgatcctcagtcagatacagtagacggtgatgatgattatgatgta
caatcagatgatggaacagaagatgatgaatgcactattgaggaagatgaggctcttttt
actgaacaagaaagacaggaagaattggatgctttacaaaatgaagtagatcttccactt
gaggagttactcaaacaatatcctatggagaaagttagcccagaaagtagtccagaaaag
ggtgaagacgtcacagaaatggcctcagcaggggaagatcatggtatttgtccagaaaag
ggtgatgatagcgcagaaatgacttctgtggggcaagatcctggtacgtgttctgaaaag
gttgaagatgatgcagaaatgacctcagttggggaagatcctggtatgcgtcctgaaaag
gttgaagatggcgcagaattgacctcagtggggaaggatcctggtatgcgtcctgaaaag
gttgaagatggcacagaaatgacctcagtgggggaagaccatggtggacaaagcgatatt
tttgtagccagtaagactgaaaaaatcagctcagacattttcaccggtcgtcgttgtgtg
gaaagtaatggtggcttgtccacttcagaaacccatttatcagatattgagataaatgga
gccaaacatatttcagaagcttctgcacagcttgccaagggacatgtgcgatatgatttt
aatgatgaacatgaagatggtgacttcattcttgctgctggagaggaaaaggatgatgag
acaactttatcagaggaggaggaactggcaagagcagataccagtgatcccatggatgag
attgccttactacagaaggagagtgaagttcctttagaggaactgcttgcaaggtataaa
aaggattcaaacagtgatgaagttgcagatggtgaatctgaatatgcctctgctttatca
gagggatttgtggattctccatctcttgaagatgttgaaccaaagcaacatggtgtttgt
atggatgaagattatgactctggtgagcaccagccggctcttgattctcctactgaagaa
cagagtgctaggatagataagatatcagaaggaggaaaggacagtgagaacagacttgag
gatgcagccgctgctgcgagatctgcacaaccaactggaaacaccttctccacaacccaa
gttcgcacaaagttcccttttcttcttaagttccctctacgtgaatatcagcatattggc
ttggattggcttgtaacgatgtatgagaaaagactgaatgggattttagccgacgagatg
gggcttgggaagacaatcatgacaattgctttgcttgcacacctagcatgtgaaaaggga
atatggggtcctcatcttattgtggtcccaactagtgttatgcttaattgggagactgag
tttctcaaatggtgtccagctttcaaaatcttaacttatttcggaagtgcaaaagagcgc
aaattgaaaaggcaaggctggttgaaaccaaactcatttcatgtatgcataacaacatac
agactggttattcaagattcaaaagtcttcaagcgtaagaagtggaaatacttgatttta
gatgaagcccatctgattaaaaattggaagtcacagagatggcaaactcttttaaacttc
aattccaaacgccgcattttgttaactggtactcctctgcagaatgatctcatggaactt
tggtctctaatgcatttcttgatgccccatgtatttcagtcccatcaggaattcaaggat
tggttctgtaatcctatatcagggatggttgaggggcaagaaaaagtgaataaggaagtt
cttgatcgtctacataatgtccttcggccattcattctccgtcgtttaaaacgagatgtg
gagaagcagctccctatgaaacatgagcatgtgataaactgtagactctccaggaggcag
cgtaacttgtatgaagacttcattgctagctccgaaacacaagcaactcttgcaagtgca
aatttttttggaatgataagtattataatgcaacttcgtaaagtctgcaatcatcccgac
ttatttgagggtcgtccgattgtcagttcctatgatatggctggtatttacacacaattg
agttcttctgtatgttcaattctttcacctggacccttttctgcagtagaccttaggggt
ttggggtttttatttactcatctagattttaccatgacttcttgggagagtgatgaagcg
aaagctcttgctactccatcaagtttaatcaaggagcgtgttgaactgactaatcttgaa
tatattggtggatttaaacatcgcaagaagttgcatggaacaaatatttttgaagaggtt
cataaggcaattatggaggagagactaagacaagcgaaggaacatgctgcagctactgca
tggtggaataacttgaggtgcaacagaaagcccatatactcaacaagcctaagggatctt
gttacaataagacatcctgtttttgacattcactctcacaaggctaatcctttgtcctac
atgtactcctcaaagctggctgatatagtcctttcaccagtggaacgctttcagaaaatg
attgacctggttgaaagttttctgtttgcaatccctgctgctcgggcgcccccacctgta
tgttggtgcagtaagtctggaagttctgtgtttcagaatccagtttataagcagaaatgc
actgaaaccttgtcaccacttctatcaccactcagacctgcaattgtccgaaggcaagta
tattttcctgacaggcgacttatacagtttgactgtggtaagttgcaagagcttgcaggt
ttgcttagaaaactgaagtcagaaggtcacagagcattaatattcactcagatgacgaag
atgcttgatatcttggaggctttcatcaatctgtatggttacacatacatgcgtttagat
gggtccactcagcctgaggagaggcagactttaatgcagcgatttaacacaaatcccaaa
atttttcttttcatattgtcaacccgtagtgggggtgttggaataaacctagttggggca
gatactgttatcttttatgatagtgattggaatcctgctatggaccaacaagctcaagat
cgatgccaccgtattggacagacacgtgaagttcatatttatcggttgatcagtcagagc
accattgaagaaaatatcctgaagaaagcaaatcagaagcgtgcgcttgatgatctagtt
atacaaagtgggggatacaacactgaattcttcaaaaagcttgatcctatggagcttttc
tctggtcatagggcacttcctgttaagaatatgcaaaaggagaaaaatcacaacacaact
gaggtttctctatccaatgctgatctcgaagctgctctaaagcatgcagaagatgaagcc
gattacatggcattaaagaaagttgagcaggaggaagctgttgacaatcaagaatttaca
gaagaagccattgtgagattggaagatgatgaattagtaaatgaggacgacatgaaggtt
gatgaaactgttgagcagggtggctggacgacctcttcaaacaaagaaaatggaataacg
ttgaatgggagtgattctaatgatgaaagagctcttactgttgcttgtagagaagatgat
gtggacatgctggatgatgtcaaacagatggctgcagcagcaggacaagaaatctcatca
tttggcaatcaattacgtccaatagataggtatgcaattcgttttctggaattgtgggac
ccaattatagacaaaacagcagtggaatctcaggttagatttgaggagacggaatgggaa
ctagaccgcattgaaaaatacaaggaggaaatggaagctgagattgatgaagatgaggaa
cctcttgtatatgaaacatgggacgctgatttcgcaactgaggcatatcgtcagcaggtt
gaggctttgactcagcatcagttgatggaggaactggaatatgaagccaaggtgaaggaa
gatgaagcagacgaaaattgtgatcctatgaagtaacaggannnnnnnnnnnnnnnnncc
aagcctaagaagaaatcgaagaaagccaaatttaaatctctgaagaaacgatctctagct
tctgaactgaaacctgtgaaaggagatcttcaagtggaacctatgtccatagatgaagac
tccatctcttatgagatggttacctattccgatatggaatcacctcgttcaattgtcaag
agaaaacgtaagaaggctgaatctagaccatttggtgaagagaagacttcaaagaaaaaa
tcaaagaaactcaagaagtctactcttgaaatttgtccttcggagtttgatactaacctc
tctacaatggagcatgatgaagttacagagtcaaaaccaagtgagagtgtggttgatttt
gagcataaaccagttagtagaagcaagatgggagggaaaatatctatcacttccatgcct
gtaaagcgtgttctcatgataaaaccagagaagttaaagaagggcaacatttggtctaga
gattgtattccaccaccagatttttggttgtcacaagaggatgcgatattgtgtgctgtt
gtacatgagtatggtccttattggagcttggttagtgacatactttatggaatgactgct
ggtgggttttataggggaagatatcgccatcctgtccattgctgtgagagatttagagaa
ctcatccaaagatatgttttgtctacaccagacaatcctaattatgaaaaagttaataat
ataggatctggaaaggctcttctaagagtaacagaggataatattcgaatgttattaaat
gttgctgctgagcagcccaatagagagtttgtcattcagaaacacttcactgccctgctt
tcatctgtctggaaggtgacatctcgcaaagatcgccgaaaaaatctcccatcatcctgg
aatggtctatattctggtggaagcttttttagttcctctaaccaaatttctcagacttcc
atgaaggaacgtacggaaagaatgaagttgagcacttttgggcacggtaccaagttgata
gctgctgcacttaatgatgccagcagcaggcaggaggatggcagagtctttcgtcccaac
ctggggaaagattcaggaacagatgcagagcggttggatataactttggaatttgaggga
gagaaagatgactccatggatgcattgccatctgttataaatttatcagtatccgattct
gaccctttgcccttgttaagtcaagctacagaagatcatcatcttcgaaactccagcaat
gatcagtgcgaagattcctgtgatataaatttagctgagaaccgtttcaggactgcaaca
agaacttgcattgaagataccatggggtgggctgcatctgcattcccaacaaatgatatc
aggtctcggtcagtgtcaaagccaccaaccacgggaaagcacaaacttgtcttctctgat
tcagttagaccttccaaatcgaagatcagaaaaagttcagtagagcatggtgagatgcgt
agctttattactgagcaggtatttcaacctttgccaatggctgcacccatgaatcccatt
ccaaggtttgacctgaatatgcctgtcaacgaggatgttggaattgatgatttggaagac
aattcttattcttacattgacgagtctttgttggaaacggaggactttggagttctccca
catgaatatgttcctggcttgattggaggccttgatgatgaactattgccagaatatatt
gacattgggtaa
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