Prunus mume (Japanese apricot): 103325733
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Entry
103325733 CDS
T03196
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 36
KO
K14778
ATP-dependent RNA helicase DDX49/DBP8 [EC:
5.6.2.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmum03009
]
103325733
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103325733
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
90S particles
Helicases
103325733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
FlaX
Motif
Other DBs
NCBI-GeneID:
103325733
NCBI-ProteinID:
XP_008226138
LinkDB
All DBs
Position
LG3:9030528..9033288
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AA seq
493 aa
AA seq
DB search
MDEEENTVDIDFPLFKPFRPKTPKPSQTSNPNPTPTPDPSSTETEIEKSTNPNTDSAAKF
SDLGLADWVLRTCTELGMRKPTAVQTHCIPKILAGRDVLGLAQTGSGKTAAFALPILQRL
AEDPFGVFALVITPTRELAYQLAEQFRGLGSSLHLRCSVIVGGMDMLTQAQSLMARPHVV
IATPGRVKVLLQQNPDIPLVFSNTKFLVLDEADRVLDAGFEEELRVVFQCLPKSRQTLLF
SATMTSDLQTLIELSENKAYFYEAYEGFKTVDTLKQEYVFISQNVKDVYLVYILSKLEDM
GVRSAIIFVSTCRSCHLLSLLLEELDQRVSALHSFKAQSLRLAALHRFKSGQVPVLLATD
VASRGLDIPTVDLVINYDIPRYPRDYVHRVGRTARAGRGGLAISLVTQNDVKLIHKIEDV
VGKQMEKFECKEDEVLADITKIYKARRVAAMKMVDDGFEEKEKERKKQKLNTLAEKGLLK
KRSLKRRREKSAK
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaagaaaacacagtcgacatagacttccctctcttcaaaccattcagaccc
aagaccccaaaaccctcccaaacctctaaccctaaccctactcctacgccagacccctcc
agcactgaaaccgaaatcgaaaaatccacaaaccctaacactgactccgccgccaaattc
tccgacctggggctcgccgactgggtcctgagaacatgtaccgagctcggtatgcggaag
cccacggcggtccagacccactgtatccccaaaatcctggcgggacgggacgtcctgggc
cttgcccagaccggcagtggcaaaacggcggcgtttgcgctgccgatactgcagcggctc
gccgaggaccctttcggggttttcgcgctggtgatcactccgactcgggagctggcgtac
cagctggctgagcagttcaggggtctggggtcgtctctgcacttgcggtgctctgtgatt
gtgggaggcatggatatgttgacccaagctcagagcttgatggctagaccgcatgtggtg
attgccacgccgggaagggttaaggtcttgcttcagcagaatccggatattcctcttgtg
ttctccaacaccaagttcctagttcttgatgaagcagatagagtattggatgctggcttt
gaagaggagttgagagtggtgtttcagtgcttgccaaagagtcggcaaactctgttattt
tctgcaacaatgacgagtgacctccaaacgctgattgaactttctgaaaataaggcatac
ttctacgaggcatatgaaggtttcaagacagttgacactcttaagcaggaatatgttttc
atatcccaaaatgtgaaggatgtgtatctggtatacattttgtctaaacttgaggatatg
ggtgttcgctctgccattatttttgtctcaacctgcagaagttgtcaccttttgagtttg
ttattggaggagcttgatcaaagagtttcagcattgcattcattcaaagctcagtctcta
agacttgctgcattacatcgattcaaatctggacaggttcctgtgttgctcgcaactgat
gttgccagtcgtggtctggacattcctacagttgacctagtaatcaattacgacattccg
aggtatccaagggattatgttcaccgcgtggggcgtactgcaagagcaggcagaggagga
ttagctatcagccttgttactcaaaatgatgtaaagctcattcataaaatagaagatgtt
gttgggaaacaaatggagaaatttgagtgcaaggaggatgaggttcttgctgatattacc
aagatttacaaggctaggcgtgttgcagcgatgaagatggtggatgatgggtttgaagag
aaagagaaagaacggaaaaaacaaaaactaaataccctagcagagaaaggtttattgaag
aaaaggagtctgaagaggagaagagaaaaatctgctaaataa
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