Prunus mume (Japanese apricot): 103325928
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Entry
103325928 CDS
T03196
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmum03009
]
103325928
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
103325928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
NBCH_WD40
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_IP5PC_F
Beta-prop_DCAF4
TPR_10
Motif
Other DBs
NCBI-GeneID:
103325928
NCBI-ProteinID:
XP_008226336
LinkDB
All DBs
Position
LG3:9845353..9847055
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AA seq
410 aa
AA seq
DB search
MSSSPHEIVLTSSPDGPIIAYDASSGAALAQFTGSRSPRGGLAIVGKSYIAASHISPTTA
SGSVHLYNWWSSTAFHNLPVLEPVAPLTATSDGLYLFAGGLSGSVHGISIPSGDVLKPLP
AHSKPVSCLAISDDESLLISGSDDGTIVVVPIFQLVGASGYDNVEELILHRFAAHSDSVT
AIVSGTGLCNSQIISCSLDCTCKFWSLLRGTLLRTIVFPCTISWVALNPTEPEFYVAGSD
GSVHKGSLKVGTRQLVTQGSELISWTPKHSGAVVSVVMVNGGRNLISASEDGSVWVWEVD
AGQVIMALGNEMGSISDLVAATGINCSKANGFGMRNGAYGSGNCHFRSSGKELMNMPIKK
ILEMEDALKVAANDRNRAIDMLESAIAMYERLLELILKEAKRGSRNNEQW
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttctccacatgaaattgtcctcaccagctctcctgacggccccattattgcc
tatgatgcttcctcaggcgccgccctagcacaattcacaggcagccggtcaccacgcgga
ggccttgcaatcgttgggaagagttatattgctgcctcacacatatcaccaaccactgct
tctggttcagtccacctttacaattggtggtcttcaactgccttccataacctccctgtc
ctggagcctgttgcacccctcaccgccacgtctgacgggttgtatctatttgccggtggc
ctatcaggcagtgtgcatggaatttcaatcccatcaggggatgtgctcaaaccattgcct
gcacatagcaagcctgtgtcttgccttgcaatcagtgatgatgagtcacttctgatttca
ggcagcgatgatgggaccattgttgttgtccccatctttcagcttgtaggagcctcagga
tatgacaatgtggaagaattgatattgcataggtttgctgctcattctgattcagtgact
gccattgtttctggtacgggattatgcaactcccagattatctcatgctcattggattgc
acatgtaaattctggagtctcttgcgtggaacgctcctgcgtaccattgtgtttccatgc
actatttcatgggttgcattgaacccaacagagcctgagttctatgttgcaggatcagat
ggttcagtacacaagggatcactgaaagttggaaccaggcaacttgtgacccaaggcagc
gaattgatctcgtggactccgaagcacagtggggcagtggtatctgtggtgatggtgaat
gggggaaggaatttgatatcagcttcggaagacgggagtgtttgggtttgggaagttgat
gcgggtcaggtgatcatggcgcttggaaatgagatggggagcattagtgatctggtggca
gctacgggcataaattgtagcaaagcgaatggttttggaatgaggaatggtgcttacgga
tctggaaattgccactttcggtcttctggcaaagaacttatgaatatgccaataaagaaa
atattagaaatggaagatgcgttgaaagtggctgcaaatgatagaaacagagccattgat
atgcttgaatctgctattgcaatgtatgagaggctcttggaactcatcctcaaggaagcc
aagagaggcagtcgcaacaacgaacagtggtga
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