Prunus mume (Japanese apricot): 103326382
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Entry
103326382 CDS
T03196
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmum04131
]
103326382
Membrane trafficking [BR:
pmum04131
]
Protein recycling
Others
EARP complex
103326382
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
TetR_C_30
Motif
Other DBs
NCBI-GeneID:
103326382
NCBI-ProteinID:
XP_008226819
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Position
LG1:complement(7700783..7716931)
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AA seq
1123 aa
AA seq
DB search
MQQNLFPFGRVLGNPFLFNGDLSEGLESPGVLFLVPFLLFQGGEMDLSKVGEKILSSVRS
ARSLGLLPSASDRPEVPARAAAAAAVARAIAGLPPHQRFGLSSSSQELSSIYGSTPQGPV
VEEIEEEFYEEDFDPVRHILEHIPSEENELTYFERQATLRLAQLDRVAERLSRNVMEHHE
VMVKGMHLVRELEKDLKVANVICMNGRRHLTSSRNEVSRDLIVNSNSKKKQALLDMLPVL
TELCHASEMQAELENLVEEGNYCKAFQVLSEYLQLLDSFSELSAVQEMSRGVEVWLGKTL
QKLDSLLLGVCQEFKEEGYITVVDAYALIGDISGLAEKIQSFFMQEVLSETHSILKNIVQ
EDKGVHMQNSRLTYSDLCLQIPEPKFRQCLLNTLAILFKLMCSYHEIMGFQLGNKDAASK
ASSMTHKESEISQTPGGVHQILSPCSSQKVNGSLLESVDIMHDSSYIEESTNTSSSIEST
GNTSSMCTSSGDLVDEARKDDNAASTSGSPWYQLRKDATAFVSQTLQRGRKNLWQLTTTR
VSVLLSSASVSSASIHQFLKNYEDLSVFILAGEAFCGFEATDFRQKLKAVCENYFVAFHR
QNIHALKMVLEKEIWLIMPPDTVQQITFPGLLGDGAPLIVPSDGNSTNARVLHSDKSTKL
VDTGMKKCGFSNWLRNGNPFLIKLTHTSKEGLKWNGAISSEIDGNFSERLGDKVSPRKSD
GSHSNGANSVLEEENEDLLADFIDEDSQLPSRISKPKLLRNQSSHYNDGDIIAQTGSSIC
LLRSMDKYARLMQKLEIANVEFFKGICQLFEVFFHFVFETFAQQNSNSGGKGSPDPINYR
LKTALSRIQQDCDQWIRAPSSSPTSLNSAFAHTDITPMSPPSTNFGNTPGTSIGLKERCA
GADTISLVARMLHRSKAHLQTMLLQNNGAVVEDFYVHLVDAVPDLIEHIHRTTARQLLHI
NGYVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHGGIRKEVQDLLLEYGLKIV
SQTLIEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVSMNVKPHLQIVEAFIKAYYLPET
EYVHWARAHPEYTKNQIVGLVNLVASMKGWKRKTRLEVLEKIE
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagaatctgtttcccttcggccgcgttttgggaaatccgtttttgttcaatggc
gatttgagcgagggcttggagagtcctggggttttgttcttggtcccctttttgttgttc
caaggtggtgagatggatttgtctaaggtcggcgagaaaattctgagctccgttaggtct
gccagatcgcttggccttcttccttctgcttctgatcgccccgaggttcccgcgcgagct
gcggctgctgcagctgttgctcgtgctattgccggactgcctccacaccaaaggtttggt
ctctcatcaagctctcaagaactgagctcaatatatggaagcacaccgcaaggtccagta
gtggaggagatagaggaagaattttatgaagaggattttgatccagttagacatattctg
gagcatattccatctgaagaaaatgaactgacttattttgagagacaggccactcttaga
ttagcacaactggatagagtagcagaacgtttatcccgcaatgttatggaacatcacgaa
gttatggtgaaggggatgcatttagtcagggaattggagaaagacttgaaagttgcaaat
gtcatttgcatgaatggacgacgtcatcttacctcatcaaggaatgaggtttctagagat
ctcatcgtgaattccaattccaaaaagaaacaagctcttctggacatgcttcctgtgtta
actgagctttgtcatgcatcggaaatgcaagcagaacttgagaatcttgttgaggaagga
aattactgcaaggcctttcaagtcctgtctgagtatttacagctgttagatagtttttca
gaactttctgcagtacaagagatgagtcgtggtgtagaggtttggctgggaaaaactctt
caaaagctggattcattgttgctaggagtgtgccaggagttcaaagaggagggctatata
actgtggttgatgcttatgcactaattggggatatctctggtcttgctgagaagatacaa
agtttctttatgcaggaagttctctcagaaacccactctatattgaagaatattgtgcaa
gaggataagggagttcacatgcaaaatagtcgacttacctacagtgatctatgccttcag
atacctgagcctaagtttaggcagtgtttgttaaatacgctagctatcctattcaagttg
atgtgttcatatcatgaaatcatgggatttcagctgggtaataaggatgcagcaagtaaa
gcttcaagcatgacgcataaggaaagtgaaatctctcagactccaggaggggttcatcaa
attttgtctccttgctcttcccaaaaagttaatggctctctcttagaatctgtagatata
atgcacgattcatcttacatagaggaatctacaaataccagctcttcaatcgagtctact
ggaaacacatcttcgatgtgtactagttctggcgatttagttgatgaggctaggaaggat
gacaatgcagcatcaacaagtggatccccatggtaccaactgcggaaagatgccacagca
tttgtttcacaaacccttcagaggggacgcaaaaatctttggcaacttacaactactcgt
gtatcagtcttgctttcttctgcttcagtttcttctgctagtatacaccaattcttgaaa
aactatgaagatctgagtgtcttcatcttggctggagaagcattttgcggatttgaagcg
actgacttcaggcagaagttgaaggcagtttgtgaaaattattttgtagcttttcatcgg
cagaatatacatgcgcttaaaatggtgttggaaaaagaaatttggttgataatgccacca
gatacggtacaacaaattacatttcctgggcttcttggtgatggagcacctctaattgtt
ccatctgatggtaactctacaaatgccagggttctacattctgacaagtctaccaaattg
gttgatactggtatgaagaaatgcgggttctctaattggcttagaaatggaaacccattt
ttgataaagctgacacatacttccaaagaaggtcttaaatggaatggtgccatttctagt
gaaattgatggaaattttagtgaaaggcttggtgataaggtctctccacgaaagagtgat
ggaagtcattcaaatggtgctaattctgttctggaagaagaaaatgaagatcttcttgca
gactttattgatgaggatagtcaactcccaagtcgaatttccaaacccaaactcctgaga
aatcaatcctcacattataatgatggagatataatagcccaaactggatcatccatttgt
cttctaaggtcaatggataaatatgccaggcttatgcagaaattagaaatagctaacgtt
gagttcttcaaggggatatgccagttgtttgaggtattttttcattttgtatttgaaaca
tttgctcagcaaaacagcaattcaggtggaaaaggctcacctgatcctattaattatcgg
ctgaagacagcgttgtccagaatacaacaggactgtgaccagtggataagggccccatca
tcttcacccacatctttgaattcagcatttgcacacacagacataacacctatgagtcct
cccagtacaaactttggtaacacaccaggaacatccatcggtctcaaggaaagatgcgca
ggtgctgacaccatctcacttgttgctcgaatgttgcatagatccaaggctcatctccag
acaatgcttcttcaaaataatggtgctgtagttgaagacttctatgtgcatctggtagat
gctgtaccggatcttatagagcacattcataggacaacagcaagacaactgctccatatt
aatggttatgttgatcggattgccaatgcaaaatgggaagtaaaagagcttggcttagag
cataatgggtatgttgacttgttgttgggagaatttaagcactataaaacaaggcttgct
catgggggaattcgcaaggaggttcaagacctcctcttagaatatgggcttaaaattgtt
tcccagactctcattgaaggcctctcacgtgttaagaggtgtacggatgaaggacgggct
ctcatgtcattagatcttcaggttttgatcaatggcctccaacattttgtctccatgaac
gtgaagccccacttacaaattgttgaagccttcatcaaggcatactatcttccagaaacg
gaatatgtgcactgggcacgtgctcacccggaatacacaaaaaatcaaattgttgggttg
gtcaaccttgttgcctctatgaaaggttggaagagaaaaaccagattggaagtgctggaa
aagattgaatga
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