Prunus mume (Japanese apricot): 103326562
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Entry
103326562 CDS
T03196
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103326562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103326562
03036 Chromosome and associated proteins [BR:
pmum03036
]
103326562
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
103326562
Coactivators
SAGA/TFTC/STAGA complex
103326562
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
103326562
STAGA complex
103326562
TFTC complex
103326562
SAGA complex
103326562
SLIK complex
103326562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
TFIID-31kDa
Histone
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
103326562
NCBI-ProteinID:
XP_008227025
LinkDB
All DBs
Position
LG3:14721175..14728011
Genome browser
AA seq
539 aa
AA seq
DB search
MSNVPKEAIEVVAQSIGISNLSPDVALALTPDVEYRVREIMQEAIKCMRHSRRTVLTTDD
VDSALKLRNVEPIYGFASGDPLRFKRAAGHKDLFYIDDNDVEFKDVIEAPLPRAPLGVSV
TAHWLAIEGVQPAIPENAPIEALAAYSDVKKSEYKEDGIPVDIKLPVKHVLSRELQLYFE
KITELTRRSSSTLFKEALVSLATDSGLHALVPYFTCFVADEVTRNLNSFPLLFALMRLVR
SLLQNPHIHIEPYLQQLMPSVITCLVAKRLGNRYTDNHWELRNFTANLVSSICKRFGHVY
HNLQPRLTRTLLHAFLDPTKTLPQHYGAIQGLAALGPSVVRLLILPNLDSYMQLLEPEMI
LEKQKNEIKRHEAWHVYGALLKAAGQCMHDRLKMFHSLLSPPAHAIWKSKGRVATTMTNK
RKASTDNLMQQPPLKKLASDGTGGAMPMNSMQVDMQGAVGGFSSSGGGLNVGLPSISHQL
PKEHMSGREVSGQMVKGSTVLAQAWKEETDAGPLLASLSEYFGESVFTFMPKSELSLFL
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatgtgcctaaagaagcgatagaggtcgtagcacagagcattggcatttccaat
ttgtctcccgatgtcgcgcttgctctcaccccagatgtcgagtaccgggtccgagagatc
atgcaggaggcaattaaatgcatgcgacactcaaggcgaactgttctgactacagatgat
gtggatagtgcacttaaattaagaaatgtggagccgatatatggctttgcctctggagat
cctttgaggttcaagagagctgcgggacataaggatttgttctacatcgatgacaatgac
gtggaatttaaagatgtgattgaagcacctttaccaagagcacctcttggtgtatcagtt
actgctcactggctggcaattgaaggtgttcaacctgcaattccagaaaatgctcctatt
gaagcactggcagcatactctgatgtgaaaaaatctgaatacaaggaagatggaattcct
gtagacattaaattgcctgttaagcatgtactgtcaagggaacttcagctttactttgag
aagattacagagcttactcgcaggtctagttccaccctcttcaaagaagcattagtcagc
ttggcaacagattcaggactccatgcgttggttccttacttcacatgctttgttgctgat
gaggttacacggaatttgaatagtttccctctcctatttgctttgatgcgccttgtccgg
agccttcttcaaaatcctcacatacatattgaaccttatctacaacaattgatgccatct
gttattacctgccttgttgccaaaagattagggaatagatatactgacaatcactgggaa
cttagaaactttaccgcaaacctggtttcttcaatatgcaaaagatttgggcatgtttat
cacaatcttcaaccacgtttgacaaggactctgcttcatgctttcttggacccaacaaaa
acattacctcagcattatggtgcaattcaagggctagcagcccttggtcctagtgtggtt
cgtctacttatactaccaaatctcgattcatatatgcaacttcttgaaccagaaatgata
ctagagaagcaaaagaatgaaataaagaggcatgaagcttggcatgtctatggggccttg
ctgaaagcggctggccaatgcatgcatgatcggctcaagatgttccacagtttgttgtct
cctccagctcatgccatttggaagagcaagggaagggttgcaacaacaatgacaaataaa
cgcaaggcaagcacagacaacttgatgcagcaaccaccactcaaaaaattagcttctgat
ggcacggggggagcaatgccaatgaactccatgcaagttgacatgcaaggggctgtaggt
ggattttcctcatctggtgggggtttaaatgttggtttaccatccatatcccaccagtta
ccaaaggaacacatgtcaggaagggaggtcagtggtcaaatggtaaagggttctacagtt
cttgctcaggcgtggaaagaggagacggatgcaggacctttactggcatcactgtctgaa
tattttggtgaaagtgtgttcacctttatgcccaaatcagagttgtctcttttcctgtga
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