Prunus mume (Japanese apricot): 103326784
Help
Entry
103326784 CDS
T03196
Name
(RefSeq) protein CHROMATIN REMODELING 5
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103326784
03036 Chromosome and associated proteins [BR:
pmum03036
]
103326784
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
103326784
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
103326784
SLIK complex
103326784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
Helicase_C
Chromo
CHD1-like_C
ResIII
HDA2-3
DEAD
Chromo_MIT1
DpnD_N
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
103326784
NCBI-ProteinID:
XP_008227245
LinkDB
All DBs
Position
LG3:complement(17298553..17322791)
Genome browser
AA seq
1760 aa
AA seq
DB search
MAFFRNYSNETVSRSVLEEKNRGQSLERIHSSTGNEDVDVISCEKEFDMNMHVQYQSEGE
QDASRLQNEAENDEGIATRASNLPSSGRRTAVAGKWGSTFWKDCQPMCSQGGSDSGQETK
SGSDYRNAVGSEDNSSDVREDRIDFEDNDRPKVSKGQRGHSDIPADEMLSDEYYEQDGEE
QSDSMHYRGFHHSVGSNSRPQSKPAAVSNHAHRTSRVLNDNEDYDDGDDDNENIDAADAD
YEEEDEDEDDPDDADFEPDYGVASGRAVQKDKDWSGENSEEDNDSDDELDVSDEDNSYYG
KKPKSRHRGKGGLSVKSTRERKSYHASSRQRRGKSSFDDEESSAEESESESDEDFKSTKR
KGVHLHKSNGRKNVTGRNGEVRTSTRSVRKVSYVESEGSDEVDEGKKKKSQKEENEEEDG
DYIEKVLWHQPKGMAEEALRNNRSIEPVLLSHLFDSEPDWNSMEFLIKWKGQSHLHCQWK
SISELQNLSGFKKVLNYTKKVMEDAKYRKTISREEIEVHDVSKEMDLDLIKQNSQVERII
ADRIRQDSSGDVGPEYLVKWQGLSYAEATWEKDVDIAFAQDAIDEFKAREAAMAVQGKMV
DLQRKKTKGSLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQ
SVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNVIVYVGTRASREVCQQYE
FNNSKIVGRPIKFNALLTTYEVVLKDKAVLSKIRWNYLMVDEAHRLKNSEAQLYTTLLEF
STKNKLLITGTPLQNSVEELWALLHFLDSDKFKNKDDFVQSYKNLSSFNEIELANLHMEL
RPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLN
IVVELKKCCNHPFLFESADHGYGGDSSTKDGSKLERIILSSGKLVILDKLLMRLHQTKHR
VLIFSQMVRMLDILAEYMSIRGFQFQRLDGSTKADLRHQAMEHFNAPGSEDFCFLLSTRA
GGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERA
KKKMVLDHLVIQKLNAEGRLEKKEAKKGTLFDKNELSAILRFGAEELFKEEKNDEESKKG
LLSMDIDEILERAEKVEEKEAEEDGNELLSAFKVANFGTAEDDGSFWSRWIKPEAVSQAE
EALAPRTKRNTKSYAEVAQPDRSNKRKKKESEPQERVQKRRKADYLVSSAPMIDGASAQA
RGWSSGNLSKRDALRFSRAVMKFGNESQIALIVEEVGGAVAGASLESQVELFNALIDGCK
EAVEVGSLDQKGPLLDFFGVPVKAVDMLNRVHELQHLAKRISRYEDPIEQFRVLTYLKPS
NWSKGCGWNQFDDARLLLGIYYHGFGNWEKIRLDERLGLIKKIAPVELQHHETFLPRAPN
LRDRANALLEMEIAVYGGKNANAKVGRKASKERENPLIVSLAHRGIKKGKAGSSRLNIEM
NKNRPLKPQKVEPLVKEEGEMSDDEEVYEKFKEEKWMEWCEEMMADSIKTLNRLERLQTI
SANLPRDTVLAKVKNYLKLLGRRIDRIVLDNEEEPHGQDKMTKRLWNYVSTFSNLSGERL
QDIYSKLILQQDEEVGPSHINGSASGPFGRDSDPTPFSRHADRQRGYKNVTNYQSFELQK
GHDTAKSEAWKRRRRGETDSNLPVQASSQRIISNGTRLTDPSSLGILGAGPPENKRVANE
RPYRMRQAGLAQKQGFTGIK
NT seq
5283 nt
NT seq
+upstream
nt +downstream
nt
atggcctttttcaggaattattctaatgaaacagtttcacgaagtgtcctggaagaaaag
aaccggggacaaagtcttgaaagaattcacagttccacagggaatgaggatgtagatgtg
atttcttgtgaaaaggaatttgatatgaacatgcacgtgcagtatcaaagtgaaggtgaa
caagatgctagtaggttgcagaatgaggcagaaaatgacgagggtattgctacaagagct
tctaatttgccgtcttctgggaggagaacggcggtggctggaaaatggggttctaccttt
tggaaggactgtcaacctatgtgctcacagggcgggtctgactctgggcaggaaactaaa
agtgggtctgattacagaaatgctgttggatctgaagataattcttcggatgtcagggaa
gatagaatagattttgaagacaatgacaggccaaaagtaagcaagggacaacggggacat
tctgacatccctgcagatgagatgttgtctgatgaatattatgagcaggatggggaagaa
cagagtgactctatgcactatagagggtttcatcattcagttgggtcgaattctaggcca
caatcaaaacctgctgcagtcagcaaccatgcacataggacttctagagttttaaatgat
aatgaagattatgatgatggtgatgatgacaacgaaaatattgatgctgctgatgctgat
tatgaagaagaagatgaagatgaagatgatcctgatgatgcagattttgaacctgattat
ggtgttgcaagtggtcgtgcagtgcaaaaggataaagattggagtggtgaaaattctgag
gaagataatgacagtgatgatgagcttgatgtgtcagatgaagataattcttattatgga
aagaaacctaagagtaggcatcgtggtaaaggtgggcttagtgttaaatctacaagagaa
cgcaaatcatatcatgcatctagtcgccaaagaagagggaagtcttcctttgatgatgaa
gagtcctcggcggaggaatctgaaagtgaaagtgatgaggactttaaaagcacaaaaaga
aaaggtgtacatctccacaaaagtaatggccgaaaaaatgtcactggacgaaatggtgag
gtacggacttctactagatctgttcggaaggtttcatatgttgaaagtgaaggaagtgat
gaagttgatgaagggaagaaaaagaagtcccaaaaggaggagaatgaagaagaggatggt
gactatattgaaaaggtgctctggcatcagccaaaaggcatggctgaagaagctctgagg
aataatagatcaatagagcctgtcttgttaagtcacttgttcgattctgagccagattgg
aatagtatggaattcttgataaaatggaaaggccagtcccatttgcactgtcagtggaaa
tcaatttccgagctacaaaatcttagcggtttcaagaaggttttaaattacactaaaaag
gtgatggaggatgctaagtacaggaagacaatctcacgtgaggagattgaggtccatgat
gtgagcaaagaaatggacttagatctcatcaagcaaaatagtcaggtggagagaataatt
gcagaccggatcaggcaagatagctcaggtgatgtgggacccgaatatctagtcaagtgg
caaggattgtcttatgctgaagcaacatgggagaaggacgtggatatcgcatttgcacaa
gatgctattgatgagttcaaggctcgtgaagctgcaatggctgtacaagggaaaatggtg
gatctccagcgcaagaaaaccaaaggaagtctaaggaagcttgacgaacagcccgaatgg
ttgaagggaggaaagctacgtgattatcagcttgagggtttgaattttcttgttaatagt
tggagaaatgataccaatgtcattttagctgatgaaatgggtcttggtaaaactgttcaa
tcagtttcaatgcttggttttttacagaatgctcaacagatccacgggccatttcttgtt
gttgtaccattatccacgttgtcaaactgggccaaagaatttaggaaatggctccctgat
atgaatgttattgtgtatgttggtacccgtgcaagcagagaggtttgtcagcagtatgaa
tttaacaacagtaaaatagttggccggcctataaaattcaatgcactattgactacatat
gaggtggttttaaaggataaggctgttctttccaagataaggtggaattatctaatggtt
gatgaagctcataggttaaagaacagtgaggcacagttgtacacaaccctcttggaattt
agcaccaagaacaagttgcttataactggtactccattgcagaacagtgtggaagagtta
tgggctctgctgcacttccttgactctgataagttcaagaataaagatgattttgttcag
agctacaagaatctcagttcattcaatgagattgagcttgctaatcttcatatggaattg
aggcctcacattctccgaagagttattaaggatgtggagaagtctttgcctccaaaaatt
gaacgaattcttagggttgaaatgtctccccttcagaaacagtactataagtggattttg
gaacgcaacttccataatttgaacaaaggagttcgtggaaatcaggtttcattgttgaat
attgtggtagagttgaagaaatgttgtaatcatcccttcctgtttgaaagtgctgaccat
ggttatggaggggactcgagtaccaaagatggcagtaaactggagaggattattttaagc
agtgggaagctggttatactcgataagcttcttatgagattgcatcaaacaaagcaccgt
gttctgattttttcccagatggtaagaatgttggacatactggcggagtatatgtcaatt
agagggtttcaatttcaacgccttgacggaagtacgaaggccgatttacgccaccaggca
atggaacattttaatgcacctggcagtgaagatttttgcttcctgctttcaactcgagca
ggtggccttggtatcaaccttgccacagcggatacagttataatattcgattcagattgg
aatcctcaaaacgacttgcaggcaatgagtagagctcacagaattgggcaacaggaagtt
gttaacatctatagatttgtcacgagcaaaagtgttgaggaagatatcctggaaagagct
aagaaaaagatggtgcttgaccatttggtgattcaaaaattaaatgcagagggtaggttg
gagaagaaagaagcaaaaaaaggaactttattcgacaaaaatgagctgtctgctatttta
agatttggagctgaagaactttttaaggaagagaaaaatgatgaagaaagcaagaaagga
ctcttaagtatggatattgatgagattcttgaaagagcggaaaaagttgaagagaaggaa
gctgaagaggacgggaatgaattgttgagtgcttttaaggttgcaaattttggtaccgct
gaagatgatggtagtttttggagccgttggataaagccggaagcagtatcccaagccgaa
gaagctcttgcccctcgtactaaaaggaataccaagagctatgcagaagttgcgcagcct
gatagaagtaataaaaggaaaaagaaagaatctgagcctcaggaaagagtccagaaaagg
cgcaaagcagattatttagttagctcagcaccaatgattgacggagcatctgctcaagca
aggggatggtcatctgggaatttatctaagagagatgcattgcggttttcccgtgcggtt
atgaaatttgggaatgagagccaaattgccttaatagttgaggaggtcggaggtgcagtt
gcaggagcttcacttgaatcacaggttgagcttttcaatgcattgattgatggctgcaaa
gaagcagtggaagtggggagtttggaccagaaggggcccttgctggatttttttggtgtc
cctgtcaaggctgttgatatgctcaaccgtgttcatgaacttcagcacctggcaaaacgc
attagtcgatatgaggatcccattgaacagttccgtgtgttgacatacctcaaaccttca
aattggtcgaaaggttgtggctggaatcagtttgatgatgcaagattgcttcttggaata
tactaccatggatttggaaattgggaaaagatacgattagatgaaaggcttggtcttata
aagaaaattgctcccgtggaacttcaacaccatgaaacatttttaccccgcgctccaaat
ttgagagatcgtgccaacgctcttctcgaaatggaaattgcagtttatggggggaagaat
gcaaatgctaaagtgggtcgtaaggcttctaaggagagggagaatcctctcattgtttct
ttagctcacaggggcatcaagaaaggaaaagccggttcttctagactcaatatcgaaatg
aacaagaacagacctttgaaaccccagaaagttgaacctttagtgaaagaggagggtgaa
atgtcagatgatgaagaagtgtatgagaagtttaaggaggagaaatggatggaatggtgt
gaagagatgatggctgactcaattaagacattgaatcgtcttgaacggttgcagacgatt
agtgccaatcttccaagggatacggtgcttgcaaaagttaaaaattatttaaagcttctt
ggacgaaggatagaccgaattgttttagataacgaggaggaaccacatggacaagataag
atgacaaagcgcttgtggaactatgtttctaccttttcaaacctgtctggggagagactt
caagacatttattcgaaacttatactgcagcaggatgaggaggttgggccttcccacatc
aatggctctgcatctggtccctttggcagagacagtgaccctactccattttcccgtcat
gcggacaggcaaagagggtacaaaaatgtgaccaactatcaatcttttgaacttcagaag
ggtcatgatacagctaaatctgaagcatggaaacgaaggaggagaggagaaaccgatagt
aatttaccagttcaggcctcatctcaaagaattatcagcaatggtactcggttaaccgat
ccaagctcactagggattcttggtgcaggaccacctgaaaataaacgcgttgcgaatgaa
aggccttataggatgcgacaggcaggtttagcccaaaaacaaggttttacaggtatcaag
tag
DBGET
integrated database retrieval system
