Prunus mume (Japanese apricot): 103327000
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Entry
103327000 CDS
T03196
Name
(RefSeq) transcription initiation factor IIF subunit alpha
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103327000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103327000
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
103327000
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
WHD_SOWAH
zf-C3HC4_3
Glyco_hydro_31_3rd
Motif
Other DBs
NCBI-GeneID:
103327000
NCBI-ProteinID:
XP_008227490
UniProt:
A0ABM0NNN2
LinkDB
All DBs
Position
LG3:20811959..20817128
Genome browser
AA seq
526 aa
AA seq
DB search
MSADLTLRSSCSGCGSTSELYGSNCKHMTLCLSCGKTMAENRAKCFECGAIVTRLIREYN
VRASTVNDKNYFIGRFVTGLPSFSKKKNAENKWSLHKEGLQGRQLSDNLREKYKNKPWVL
EDETGQSQYQGHLEGAQTATYYLPAGSWFNFNKVAQYKQLTLEEAEEKIKNRKKTADGYE
RWMMKAANNGAAAFGEVERFDKDNGVTSGKGRKKAGDDDDGEGNVSDKGEEDEEEELARK
NRLNKKGGDDDDDDGARGADADLDDDDVEKGDDWEHEEIFTDDDEAVGNNPEEREDLELE
VPAPPEIKQDDEDEEEDDKEGGLSKSGKELKKLLGRTGGLDDSDAEDDDDDDDDMDDDIG
FPQAAAPKQKDAPKEEPSDNSPSKPVPSGSARGTPSTAKSAKVKRKLSADDAKTSNSAPP
KKVKSENEQKVSIKEEPASASKSSTPSKGTPSVKVEPTSSSGPVTEEEIRTVLVQRTPVT
TQDLVARFKARLRLPEDKTAFAAILRKISKIQKTTNGSSYVVLRDK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgatttgacgctgagatcatcgtgcagcggatgtggatcgacgtcggaatta
tacggaagcaattgcaaacacatgactctgtgcctgtcctgtggcaaaaccatggctgag
aaccgcgccaaatgctttgaatgtggcgccatcgtcactcgcttaattcgagagtataat
gttcgtgcaagtactgtaaacgacaagaactacttcattggtagatttgtgactgggttg
ccaagtttttcgaagaagaaaaatgctgaaaataagtggtctcttcacaaggaaggacta
caaggacgccaactttctgataacttgcgggagaagtacaagaacaaaccttgggtcttg
gaggatgaaactggccagtctcagtaccagggtcatcttgaaggtgcacaaactgcaaca
tactaccttcctgctggttcttggttcaacttcaacaaggttgcacaatacaagcaactt
acattggaggaagccgaagagaaaattaagaataggaaaaagaccgcagatggatatgaa
agatggatgatgaaagctgcaaataatggagctgctgcatttggtgaggtggagaggttt
gacaaggataatggtgtgacgagtgggaagggaaggaaaaaagctggtgatgatgatgat
ggtgaaggaaatgtctcagataaaggtgaggaggatgaggaagaagagttagccaggaaa
aatagactgaacaaaaaaggtggtgatgatgatgatgatgatggtgcaaggggagctgat
gctgacttggacgatgatgatgtcgagaagggtgatgattgggagcatgaagaaattttc
accgatgatgatgaagctgttggcaataatcctgaggaaagggaagatttggaacttgag
gttccagctcctccagaaattaagcaggatgatgaggatgaggaggaagatgacaaggag
ggtggactgagcaaatctggaaaagagttgaagaagctacttgggcgaactggtgggctg
gatgattcagatgcagaggatgacgacgatgacgatgacgatatggatgatgatattggc
tttcctcaagcagcggcaccaaagcaaaaggatgcacccaaagaggaaccatctgacaac
agtccctcaaaaccagtgccttctgggtctgctcgaggaactccatctactgccaagtcc
gcaaaggtaaagagaaaattaagtgctgatgatgctaagacatctaacagtgcacctccc
aagaaggtgaaaagtgaaaatgaacaaaaagtttccatcaaagaggagcctgcatctgct
tctaaaagtagtacaccttcaaaaggtactccatcagtaaaagtggagccaacatcatca
agtggacccgtcactgaggaagaaatcaggactgttttggtgcaaagaacaccagtcacc
acacaagatcttgttgctagatttaaggcaagactcagattgccagaggacaagacagct
tttgctgcgatcctgaggaaaatttctaagatacagaagaccaccaatggatccagctat
gttgtgctgagagataaatga
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