Prunus mume (Japanese apricot): 103327049
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Entry
103327049 CDS
T03196
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03440
Homologous recombination
pmum03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103327049
03460 Fanconi anemia pathway
103327049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmum03032
]
103327049
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103327049
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
103327049
DNA replication proteins [BR:
pmum03032
]
Eukaryotic type
DNA Topoisomerases
103327049
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
103327049
FA (Fanconi anemia) pathway
103327049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
Motif
Other DBs
NCBI-GeneID:
103327049
NCBI-ProteinID:
XP_008227548
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All DBs
Position
LG3:complement(21277156..21295409)
Genome browser
AA seq
910 aa
AA seq
DB search
MRVLNVAEKPSVAKSVASILSGNQNLRMREGRSRYNKIYEFNYSINGLPCHMLVTSVTGH
LMELEFEDRFRKWHACDPAVLFTAPVRKFVPQDKLDIKRTLEEVARGCQWLVLWLDCDRE
GENIAFEVIEVCTAVNRQLTLRRARFSALIERDIHDAVQNLVNPNKCFADAVDARQEIDL
RIGASFTRFQTMLLRDAFVIESATNDRNLVLSYGPCQXXXXLGFVVERYWEIQSHELEEF
WTINCSHRSDEGVATFNWMRGHFFDYTCAVIIYEMCVEEPTATVTKVRQQEKLKYAPAPL
NTIQLEKRASIYFRMSSEHTMKVAEELYQAGFISYPRTETDSFSERTNLHAIVQEQQGHP
GWGSYAQRLLDPASGLWRNPRNGGHDDKAHPPIHPTKFSSGESGWSQDHHRLYELVVRHF
LACVSQPAVGAETTVEIDIAGELFFASGRVIVAKNYLDVYRFESWGGSLLPTYEVGQQFV
PTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDSSMRFSP
TNLGEALVMGYDDMGYKLWKPYLRAVMERDMKAVSEGAKSKAEVLETCLQQMKACFLDAR
LNKVKLFEAMAVFFERSNRSGGDEQHVSGEFVRRCGLCQEADMVLRQNRDGNFMVGCLGF
PQCRNVVWLPGSVSEAAVTTNVCNSCTPGPVYLIQFTFRRLEIPPDYSANHLGCIGGCDE
TLRQLTEICGTGSRLSARGRGGPAMPNNVQRSNTRQGACIYCHQTGHSSGNCPSQSSGPR
SSRPQSMNVQSGQVSISCSACGALCALRTANTTTNRGRKFYSCQSQACNFFVWEDSINNG
NRGRGFQRVNVSASASNPSRSQGHGRGGRGAVDAAGVTFVSATGDPISGRRCFVCGDPSH
FANACPNRGI
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgagggtgctgaatgtggcggagaagccgtcagtggcgaagtcagtggcgagcatactc
tcagggaaccaaaatctgagaatgagggaaggccgatcccgctacaacaaaatctacgag
ttcaactactccatcaatggcctcccctgccacatgctcgtcacctccgtcactggccac
ctcatggagctggaatttgaagaccgcttccgcaagtggcacgcctgcgaccccgccgtt
ctcttcaccgctcccgtccgcaagttcgtcccccaggacaagttggatatcaagaggacg
ttagaggaggtagctagggggtgccaatggcttgtattgtggcttgactgtgatagagaa
ggagaaaacattgcatttgaagtgatagaagtctgcacagccgtaaatcgtcaacttacc
ttaaggagggctcgtttctcagctttgattgagagagatatccatgatgcagtgcagaat
cttgtcaacccaaacaaatgctttgcggatgcagtggatgctaggcaagaaatagacctt
cgaattggtgcttcgtttaccaggtttcagactatgctgctcagagatgcatttgttatt
gagtctgctacaaatgacagaaatcttgttctaagttatggtccttgtcagttnnnnnnn
nnncttggatttgttgtggaacgatattgggagatacagtcgcatgagctggaggaattt
tggaccattaactgttcacacagatcagatgaaggcgttgctacattcaattggatgcgt
ggacattttttcgattacacttgtgctgttataatttatgagatgtgtgttgaggaacct
actgctactgtcacgaaggtgagacaacaggagaagctgaagtatgctccagcgcctttg
aataccattcagcttgaaaagcgtgcctcgatatactttcggatgagctctgaacacaca
atgaaggtggcagaagagctttaccaagctggtttcatcagttaccctcgtacggagact
gatagcttctctgaaaggaccaatttgcatgcgattgtacaagagcaacaagggcatcct
ggatggggatcatatgctcaaagattgttagaccctgcatccgggctttggagaaaccct
aggaatggtggacacgatgacaaggcccatccacctattcacccgaccaaattttcttcc
ggagaatcaggatggagtcaagatcaccatagattgtatgagctggttgttcgccatttc
ttggcatgtgtctcacagccagctgtaggggctgaaaccactgttgaaattgatattgct
ggcgaattgttctttgcatcagggagagtgatagtagctaaaaattacttagatgtttat
cgctttgaatcatggggaggttcattgctaccaacgtatgaagttggacaacagtttgtc
ccaacaacattgactctggattcaggagtcacaaggcctccaccacttttgagtgaagct
gatttgctgagttgtatggacaaggagggcattggtacagatgcaacaatgcatgatcac
ataaaaaagctgcttgatcgattttacgcaactaaggactcaagcatgcggttctcacca
accaatcttggtgaagcgttggtgatgggatatgatgacatggggtataaactctggaaa
ccctaccttagagctgttatggagcgtgacatgaaagcagttagcgaaggtgccaagagc
aaagctgaagttttggaaacttgcttgcagcaaatgaaagcttgcttcctagatgcaagg
ttgaacaaagtaaaactctttgaagccatggcagtattctttgagagatcgaataggtct
ggtggagacgagcagcatgtatctggagagtttgttcggcgatgtggcctttgccaggaa
gcagatatggtgcttaggcaaaatagggatgggaatttcatggttggatgcttgggtttt
cctcagtgtaggaatgttgtctggctccctggttctgtatcagaagcagctgtaacaact
aacgtttgcaattcctgcactccaggtcctgtttacttgattcaatttacatttcgccgg
ctggaaataccaccagactacagtgccaatcatttgggttgcattggtggctgtgatgaa
actcttagacagttgacagaaatctgtggaactggttctcggttgtcagcgagagggcgt
ggtgggccagcaatgccaaacaatgtccaacgaagtaataccaggcagggtgcttgcata
tactgtcatcaaacagggcattcttcaggcaattgcccttcccaatcttcaggtcctcga
agttcgaggcctcaatctatgaatgttcaaagtgggcaagtgtcaatctcatgtagtgca
tgtggtgcactgtgtgctttacgaactgctaatacgacgactaacagaggaagaaaattc
tactcatgtcagtcgcaggcgtgcaacttctttgtatgggaggatagcatcaacaatggt
aatagaggaagaggttttcagcgtgtaaatgttagtgcctcagcatcgaaccccagtcgg
agtcaaggccatggtagaggtggccggggtgcagtagatgccgctggtgtgacttttgtg
tcagcaactggtgatcccatctctggtagaaggtgttttgtctgtggagatccatcgcac
ttcgcaaatgcttgcccgaatcgtggtatctga
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