Prunus mume (Japanese apricot): 103327299
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Entry
103327299 CDS
T03196
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103327299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103327299
03009 Ribosome biogenesis [BR:
pmum03009
]
103327299
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103327299
Spliceosome [BR:
pmum03041
]
Complex A
U2 snRNP components
U2 related factors
103327299
Complex B
103327299
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
103327299
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
90S particles
Helicases
103327299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
SRP54
ResIII
nSTAND3
T2SSE
FtsK_SpoIIIE
AAA_7
ABC_tran
AAA_30
AAA_16
AAA_11
NACHT
Motif
Other DBs
NCBI-GeneID:
103327299
NCBI-ProteinID:
XP_008227833
LinkDB
All DBs
Position
LG4:complement(484712..489160)
Genome browser
AA seq
730 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSSAKMSKSNGGAGATANHNAVSNLINRWTGKPYSQRYYEI
LEKRKTLPVWHQKEEFLQALKASQSLILVGETGSGKTTQIPQFVLEAVDSETPDKRKKMM
IACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT
DPLLERYSVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQGYFSGA
PLMKVPGRLHPVEIFYTEEPERDYLEAAIRTVVQIHMYETPGDILVFLTGEEEIEDACRK
INKEVGNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPPPINEGGIPGRKIVVSTNIAETS
LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE
KSFHNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLG
ALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQ
KAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKSADNVRQQLVRI
MARFNLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL
DHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIASHYYDLANFPQCEAKRVLEKLYKKR
EDRDENKNRK
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagcctgttcgacgtggtggacgagacctcagtc
tcatcagctaagatgagtaaatcgaacggtggtgcaggagccacagcgaatcataacgcg
gtgagcaatctgatcaataggtggaccggcaagccttactcgcagaggtattatgagatc
cttgagaagaggaagactttgcctgtttggcaccagaaagaggagttcttgcaagctctc
aaggccagccagtctcttattttggttggtgagactggtagtggtaaaaccacccagatc
cctcaatttgttttggaagctgttgattcggaaactccagataaacgtaagaagatgatg
attgcatgtacccaaccccgtagagtggctgcaatgtcagtgtcccgtcgtgttgctgaa
gagatggatgtaaccataggagaagaggttggttatagcatccgttttgaggactgcagc
agtgccagaacagtgctgaagtatctaacggatggaatgcttttaagagaagcaatgaca
gatccactattagagcgatacagtgtgataattcttgatgaggctcatgaaagaacttta
gcaacagatgttctatttgggcttctgaaggaagtattgagaaacagacctgacttgaag
ctggttgtgatgagtgctacacttgaggctgaaaagtttcagggttatttcagtggtgca
ccactcatgaaagttcctggaaggcttcatccagtggaaattttttacactgaggaacct
gaaagggattatctggaggcagcaattcgaactgttgtgcagattcatatgtatgagacc
ccaggcgatatacttgtttttctaacgggagaggaagagatagaagatgcgtgccgcaaa
attaacaaagaagttggaaacctgggtgaccaggttggtcctgtgaaagtggtccctcta
tattcaactcttcctccagctatgcaacagaaaatatttgatcctgctcctcctcccata
aatgaaggcggaattcctggaaggaagattgtagtgtcaacaaacattgcagaaacttct
ctcactatagatggaattgtttatgttattgatccgggatttgctaaacaaaaagtttat
aacccacgagtgcgtgttgaatccttgttggtatctccaatttctaaggcaagtgcacat
cagaggtcagggcgtgctggaagaactcagccaggaaaatgtttcagactatatactgag
aaaagtttccataatgatcttcaaccacagacatatccagaaatattgagatcaaacctt
gcaaatacagttcttactttgaagaaactaggaatagatgatttggttcattttgatttt
atggatccccctgctcctgagacattgatgagagcattagaggttttgaattatttgggc
gcattggatgatgatggtaacttgacgaagctgggggagattatgagtgagttcccgtta
gatcctcagatgtcaaaaatgctggttgttagccccgagttcaactgctcaaatgaaatt
ttgtcaatatctgcaatgctttcagtacccaattgctttgtccggcctagggaggctcaa
aaagctgcagacgaggcaaaagctaggtttggacacattgatggggatcatctcacgctt
ctgaacgtgtatcatgcatacaagcaaaacaatgaggatccatcgtggtgctatgagaac
tttgtcaatcagagggctttgaagtctgcagacaacgtcaggcagcaactagtgcgcata
atggcccggtttaacctgaagttatgtagcactgatttcaatagtcgtgactactacata
aacataagaaaagccatgctagctggatatttcatgcaggtggctcacctggaacgcact
ggacactacctgacagtgaaagataaccaggtggtacatttgcatccgtcaaattgcttg
gatcataaaccagaatgggtgatttacaacgaatatgtcttgacaagcaggaattttatc
cgtacagtcacagatattcgtggggagtggcttgttgatatagcatcccactactatgat
ttggcgaattttccccagtgtgaggccaagcgtgttcttgagaagctttacaagaagcgg
gaggacagggatgaaaacaaaaacagaaaatga
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