Prunus mume (Japanese apricot): 103327709
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Entry
103327709 CDS
T03196
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03082
ATP-dependent chromatin remodeling
pmum03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103327709
03083 Polycomb repressive complex
103327709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmum03036
]
103327709
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
103327709
Histone modification proteins
HAT complexes
HATB complex
103327709
HDAC complexes
Sin3A-HDAC complex
103327709
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
103327709
PRC2.2
103327709
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
103327709
Heterochromatin formation proteins
Other heterochromatin formation proteins
103327709
Chromatin remodeling factors
NuRD complex
103327709
NuRF complex
103327709
NuRF complex (fruit fly)
103327709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WDR55
EIF3I
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
eIF2A
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_SCAP
Beta-prop_IP5PC_F
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
103327709
NCBI-ProteinID:
XP_008228297
LinkDB
All DBs
Position
LG4:3466187..3472078
Genome browser
AA seq
468 aa
AA seq
DB search
MKEMRGKGAEETVNERYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRL
YLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIR
ELPQNSKIVATHTDSPDVLIWDIEAQPNRHAVLGASNSRPDLLLTGHQDYAEFALAMCHS
EPFVLSGGKDKSVILWSIHDHISSLASDPGSARSPGSGGANAKHASKTGGSNDKPTDSPS
VEPRGIYQGHGDTVEDVQFCPTSAQEFCSVGDDSCLILWDTRAGSSPVVKVEKAHDADLH
CVDWNPNDVNLILTGSADNTVRMFDRRNLTSGQVGSPIYTFEGHNAAVLCVQWSPDKSSV
FGSSAEDGVLNIWDHEKIGKKQDSVGSKPSNAPPGLFFRHAGHRDKIVDFHWNASDPWTI
VSVSDDCGSTGGGGTLQIWRMIDLIYRPEEEVLAELDTFKSHLMTCQA
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaatgagagggaaaggtgcggaggagacggtgaacgagagatacacacagtgg
aagtcgctggtgccagtgctctacgactggctcgccaaccacaacctcgtttggccttct
ctctcttgcagatggggtccgcaactagagcaagccacttacaagaaccgtcagcgcctg
tatctttccgaacagactgatggcagtgttccaaatacacttgtcattgcgaactgtgaa
gttgtcaaacctagggttgcagctgcagagcacatatcacagttcaatgaagaagcacgc
tctccttttgtaaaaaagtataaaactattatacatcctggtgaggtgaacagaataagg
gaactcccacagaatagtaagatagtggccacacacactgacagtcctgatgttctcatt
tgggatattgaggctcaacctaatcgacatgctgtcctgggagcttcaaattctcggcca
gatctgctattgactggtcatcaagattatgccgaattcgctcttgctatgtgccactct
gaaccctttgtgctctctggagggaaggataaatcagtgattttgtggagtattcatgat
catatctcatctttagcatcagatccagggtctgcaaggtctccaggatctggaggtgcc
aatgctaaacatgcctctaagactggtgggagtaatgacaaacccacagacagcccttct
gttgagccacggggtatctatcaagggcatggggatactgttgaggatgtgcaattctgc
ccaactagtgcacaagagttctgtagtgtaggcgatgattcttgcctcatactgtgggat
acaagagctggctctagtccagttgtcaaggttgagaaagctcatgatgctgatcttcat
tgtgttgattggaatccgaatgacgtcaatctcattcttacagggtctgctgataatact
gttcgcatgtttgatcgccggaacctcacttccgggcaagttggatcacccatttataca
tttgagggtcataatgcagctgtcctctgtgtacagtggtctcctgacaagtcatctgtc
tttgggagttctgctgaggatggtgtattaaacatctgggatcatgaaaagattggtaag
aagcaagactctgttggatcaaagccgtcgaatgctcctccaggattgttcttccgacat
gctggtcatagggacaagattgttgattttcattggaatgcatctgatccgtggacaata
gttagtgtttctgatgattgtggaagtaccggaggtggtggtacactccagatatggcgg
atgattgatttgatttacaggcctgaggaagaggtcctcgcagagctggatacgttcaaa
tcgcacctaatgacatgccaggcgtga
DBGET
integrated database retrieval system
