KEGG   Prunus mume (Japanese apricot): 103327983
Entry
103327983         CDS       T03196                                 
Name
(RefSeq) DNA-repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    103327983
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmum03400]
    103327983
DNA repair and recombination proteins [BR:pmum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     103327983
SSDB
Motif
Pfam: BRCT PTCB-BRCT BRCT_2 RTT107_BRCT_5
Other DBs
NCBI-GeneID: 103327983
NCBI-ProteinID: XP_008228593
LinkDB
Position
LG4:5094819..5098228
AA seq 382 aa
MSHSKTSQGDGSNNAGKRNLPSWMSSRDNESESVGKKPTRAGECEESNEGAKPRLAKGRG
GASSSGTTQFSKLMEGVVFVLSGFVNPERSILRSQALEMGAEYQPDWNSDCTLLVCAFPN
TPKFRQVEADCGTIVSKDWISECYTQKKLVDIESYLMNAGKPWRKSSVSHDNSQDKKASQ
PRKSKKQDGDSPSKPTASSNPKQVKASNSVKECFSPSKVKKWAVDDLNKTISWLESQEEK
PEPDEINQIAAEGILTCLQDAIDSLEQKQDVRQITEQWNFIPRVVEELAKLEGTRNESAA
VSKEDLCRQVMECKRIYEVELKNLGDDLSKKKKPKTERQERDSGRTEAISSGTAGYDSDE
TIEMTEEEIDLAYKNVVASKIP
NT seq 1149 nt   +upstreamnt  +downstreamnt
atgtctcattcgaaaacaagccagggtgatggttccaataatgctgggaagcgaaacctt
ccttcatggatgagttcaagagacaatgagagtgagtctgttggaaagaaaccaactcgg
gctggtgaatgtgaggagagtaacgagggtgcaaagcccaggctagccaaagggcgtgga
ggtgcatccagttcgggaaccacacaattttccaaacttatggaaggagtagtgtttgta
ctgtctgggtttgttaatcctgagcgcagcattctgcggtcacaggccttggaaatggga
gcagaatatcagcctgactggaactcagattgcactctcttggtttgtgcatttccaaac
accccaaagtttcgacaagttgaggcagattgtggaactatagtttcaaaggattggata
tcagagtgttacacacagaagaagcttgttgatattgaaagttaccttatgaatgctgga
aaaccctggcgtaaaagcagtgtttcccatgacaacagccaagacaaaaaggcatcccaa
cctagaaaatcgaagaagcaagatggagattcaccatcaaaaccaactgcatcatcaaat
ccaaagcaggttaaagcttctaattctgttaaggagtgcttttctccttctaaagtgaag
aagtgggcagttgacgatttgaataagacaatttcatggctggagagtcaagaagaaaag
ccagagccagatgagataaaccaaatagcagctgaagggattttaacttgtttacaagat
gcaatagattctcttgaacaaaagcaggatgtccggcaaataactgagcagtggaatttc
attcctcgtgtagttgaagagttggcaaagctcgagggcacgagaaatgagtctgcagca
gtatccaaggaagatctttgcagacaggtaatggagtgtaaacgaatttatgaggtggaa
cttaagaatttaggcgatgacctgtcaaagaagaagaagccaaagactgaaagacaagag
agggacagtgggagaactgaagccatatccagtggtacagcaggatacgacagtgatgaa
acaattgagatgacagaagaggaaatagaccttgcatataagaatgttgttgcttctaag
atcccctaa

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