Prunus mume (Japanese apricot): 103328242
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Entry
103328242 CDS
T03196
Name
(RefSeq) ubiquitin receptor RAD23b-like
KO
K10839
UV excision repair protein RAD23
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03420
Nucleotide excision repair
pmum04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103328242
09124 Replication and repair
03420 Nucleotide excision repair
103328242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
pmum03051
]
103328242
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103328242
Proteasome [BR:
pmum03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
103328242
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
103328242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
CUE
UBA_3
TECR_N
Rad60-SLD_2
Dsc3_N
UBA_RAD5A
Motif
Other DBs
NCBI-GeneID:
103328242
NCBI-ProteinID:
XP_008228865
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Position
LG4:complement(7447896..7453663)
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AA seq
374 aa
AA seq
DB search
MKLTVKTLKGSHFEIRVQPTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA
DNKVTEDGFLVVMLSKSKTSGLAGASSAQPTSTNPPATPPTTNSTTRPEAPAQPPPVQST
ISASDTANVHTDTYGQAASTLLAGTNLEQTIQQIMDMGGGNWDRETVTRALRAAYNNPER
AVDYLYSSIPETAEVAVPVGHFPASQATETGPANAAPVSGAPNSAPLNMFPQETLSGAGA
GALGSLAFLRNNRQFQALRSMVQANPQILQPMLQELGKQNPQLLRLIQEHHTEFLQLINE
PLEGSEGDIFDQPDGPDQDMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEEL
AANYLLENAGDFED
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcactgtaaagaccctcaaaggcagccatttcgaaattagggttcagcccact
gacaccgttatggctgtgaagaagaacattgaagatgtacaaggaaaagataattatcca
tgtgggcagcagttattgattcacaatgggaaggtcttgaaagatgaaactacattggct
gacaacaaggtcacagaagatggttttcttgttgtcatgcttagcaagagtaaaacttca
ggcttagcaggggcttcatccgctcagcctacttccacaaatcctcctgcaactccacca
accacaaattctacaactagacctgaagctcctgcacaaccaccacccgtacagagtacc
atatctgcttccgacactgcaaatgtgcatactgatacctatggtcaagctgcttcaact
ttacttgctggtactaatcttgagcagactattcaacaaataatggatatgggcggtgga
aactgggacagagaaacagttacacgtgcacttcgagcggcatataacaatccagagaga
gcagtcgactacttgtactctagtattccagaaacagcagaagttgcagtgccggtagga
catttcccggcaagccaggcaactgaaacagggccagccaatgctgcacctgtctctgga
gcacctaactctgctcctttgaatatgtttcctcaggaaacactctctggtgctggtgct
ggtgcacttggatccctcgccttcctcaggaataatcgccagttccaagcgttgcgctca
atggtgcaagcaaatccacaaattttacagcccatgctgcaggagcttggaaagcaaaac
ccccagcttttaagattaattcaggaacaccacactgagttccttcagttaataaatgaa
cctcttgaggggtctgaaggtgacatatttgatcagcctgacggccctgaccaagatatg
cctcatgccatcaacgtaaccccggctgagcaggaggccattgaacgactcgaagcaatg
ggatttgatagggctttggtcatcgaggcatttttagcatgcgatcgcaatgaagaattg
gcagcaaactacttattggagaatgctggagattttgaggattga
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