Prunus mume (Japanese apricot): 103328547
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Entry
103328547 CDS
T03196
Name
(RefSeq) protein STABILIZED1
KO
K12855
pre-mRNA-processing factor 6
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103328547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103328547
Spliceosome [BR:
pmum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
103328547
Complex C
U5 SnRNP specific factors
103328547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_14
HAT_PRP39_N
TPR_19
Suf
PRP1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_2
TPR_CcmH_CycH
TPR_8
ARM_TT21_C
TPR_1
PMC2NT
Motif
Other DBs
NCBI-GeneID:
103328547
NCBI-ProteinID:
XP_016649402
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All DBs
Position
LG4:complement(11333513..11337493)
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AA seq
819 aa
AA seq
DB search
MDSRRKDRREARLKEEIEKYRASNPKITEQFANLKRKLYTVSAQEWESIPEIGDYSLRNK
KKRFESFVPVPDTLLEKARQEKEHVTALDPKSRAASGTETPWSQTPVTDLTAVGEGRGTV
LSLKLDRLSDSVSGLTVVDPKGYLTDLKSMKITSDAEISDIKKARLLLKSVTQTNPKHPP
GWIAAARLEEVAGKIQAARQLIQKGCEECPKSEDVWLEACRLANPDEAKAVIAKGVKTIP
NSVKLWMQAAKLEHDDLNRSRVLRKGLEHIPDSVRLWKAVVELANEEDARLLLHRAVECC
PLHIELWLALARLETYDNAKKVLNKAREKLSKEPAIWITAAKLEEANGNTSMVGKIIERG
IRALQREGLAIDREAWMREAEAAERAGSVATCQAIIRNTIGIGVEEEDRKRTWVADAEEC
KKRGSIETARAIYAHALTVFLTKKSIWLKAAQLEKSHGTRESLDALLRKAVTYRPQAEVL
WLMGAKEKWLAGDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENNEPERARMLLAKARE
RGGTEKVWMKSAIVERELGNLDEERKLLDEGLKRYASFFKLWLMLGQLEERLGHLEKAKE
AYDSGLKHCSNSIPLWLSRANLEEKMVGLSKARAVLTMGRKKNPQNPELWLAAVRAELRH
GNKKEADILMAKALQECPNSGILWAASIEMVPRPQRKTKSMDALKKCDHDPHVIAAVAKL
FWHDRKVDKARNWLNRAVTLAPDIGDFWALYYKFELQHGTEENQKDVLKRCEAAEPKHGE
KWQPISKAVENSHQSIEAILKKVVVALGKEESAAENNKH
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggactcgaggagaaaagaccggagagaagctcggttgaaagaagagattgagaagtac
agagcttcgaacccgaagatcacggagcagtttgcaaatttgaagagaaagttgtacacc
gtgtctgctcaggaatgggagagcatacccgaaattggagactattcattgaggaacaag
aagaagagattcgagagctttgtgccggtgcccgatacgcttttagagaaggcgagacag
gagaaggagcatgttacggctttggaccccaagagtcgggcagctagtggtacggagacg
ccatggtcccaaactccggttacagatttgaccgccgtaggtgagggtagaggtactgtg
ttgtcattgaaattagataggctttctgattctgtttctgggctgacggttgtggaccca
aaagggtaccttactgatcttaagagtatgaagattactagtgatgctgagatttctgat
attaaaaaggccagattgttgctcaagagtgtaacacagacgaatccgaagcacccacct
ggttggattgcggctgcaaggctagaggaggtggctgggaagattcaagcagccaggcag
ttgattcagaaagggtgtgaggagtgtcccaagagtgaggatgtgtggttagaggcgtgt
aggcttgctaacccggatgaagctaaggctgtgattgccaagggtgtcaagacgataccc
aattcggtgaagttgtggatgcaggctgcaaaactagagcatgacgatttgaataggagc
agagtgttgaggaaagggttggaacacattcctgattctgttaggctgtggaaggcggtt
gtggagctggcaaatgaggaagatgcaagacttctgcttcacagggccgtggagtgttgc
cccttgcacattgaattgtggcttgcacttgcaagattggaaacttatgataatgctaag
aaggtcctcaataaggcaagagaaaagctatcaaaggagccagccatttggatcactgcg
gccaagttagaagaagctaacggaaatacgtccatggttgggaagattattgaaagaggt
ataagggccttgcaaagggaaggattagcaattgatagagaagcgtggatgagggaggct
gaagctgctgagcgtgcagggtctgttgcaacatgccaagcaatcattcggaacacaatt
gggattggtgtggaggaagaggatagaaagcgcacatgggttgctgatgcagaggaatgc
aagaaaaggggttcgattgagacagccagagctatttatgctcacgcacttactgtgttc
ttaaccaagaagagcatatggctcaaagctgcacaacttgaaaagagccatgggactcgg
gaatctcttgatgctttgcttcgtaaagcggtgacatatcgaccacaagctgaagtcttg
tggcttatgggagctaaggagaagtggcttgctggggatgtgcctgctgcccgtgccatc
ctccaagaagcttatgctgctatacccaattctgaagaaatttggcttgctgcatttaaa
cttgaattcgagaacaatgaacctgagagagctagaatgcttcttgccaaagcccgagaa
aggggaggcacggaaaaagtttggatgaaatcagcaattgttgagagagagttggggaac
cttgatgaggagaggaagttacttgatgagggattgaagcggtacgctagcttctttaaa
ttgtggttgatgcttggacaactagaggaacggcttggtcatttggaaaaagccaaggag
gcttatgactcaggtctgaagcactgctccaattctattccactctggctttctcgtgct
aatctggaagagaagatggttgggctgagtaaagctcgtgcagttctcacgatgggcagg
aagaagaatcctcagaatcctgaattgtggcttgctgctgttcgagctgaattgaggcat
ggtaataagaaggaagctgatattttgatggcaaaggctttgcaggagtgtcccaatagt
ggtatcttgtgggctgcatctattgagatggtaccccgtccccaacggaagaccaagagt
atggatgccctcaagaaatgtgatcatgatccccatgtcattgctgctgtggctaagtta
ttttggcatgataggaaggttgacaaagctaggaattggctaaacagggcagtgacactt
gctccagatattggggatttctgggctttatactacaaatttgaacttcaacatgggact
gaggagaaccaaaaggatgtactgaaaaggtgtgaagcggcagaaccaaagcatggtgaa
aagtggcaacctatttcaaaggctgtggagaactctcaccaatcaattgaagctatcttg
aagaaagtggtggttgctcttgggaaggaagagagtgcagccgaaaataataaacactag
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