Prunus mume (Japanese apricot): 103328598
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Entry
103328598 CDS
T03196
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103328598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmum04131
]
103328598
Membrane trafficking [BR:
pmum04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
103328598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
VPS8_N
Clathrin
TPR_VPS8_2
Beta-prop_EML
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_RIG_2nd
WD40
ANAPC4_WD40
WD40_WDHD1_1st
Beta-prop_HPS5
WD40_Prp19
Beta-prop_TEP1_2nd
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
103328598
NCBI-ProteinID:
XP_008229220
LinkDB
All DBs
Position
LG4:complement(11990049..11999843)
Genome browser
AA seq
1924 aa
AA seq
DB search
MTKKLIQLEPQFSMEFDLDSFLNSHLSLYDEDDDENLNSVPHRTIDEILNDSDLSVSSSP
PSTIHRLASDPKPQHPPTDAESVSSTKSDESSQVRPRPNLYTWVKSGELSDDPVGKVLKP
SPWLLGGMRTNAKPGAALAAAAAASRSMPTPHAAAIKSKRSAGSGIFQKALESTELDDKS
EVRSNSNNDTNVGSSSEVTESNSNEGEVDFGDELLRKGRVWERETELEETSQGIEVSAGN
APEEVKNVSFDENLTNLDANDVKDNEFNNNVEVVEECQQEIQDIDENSHGSKHSDSEEER
LGDGGAGGNDNDGEGGGGGDDDNNNDRDSDDDGELGSSITQLVEERIGQLESRRISKKAE
KKLQKPLEIAEELEKKQASTALHWEEGAAAQPMRLEGVRRGSTTLGYFNVDANNPITRTL
SAPALRRDHGSPQVLAVHSNYIAIGMARGAILVIPSKYSAHNADIMDAKMLILGLQGERS
YAAVTSICFNQQGDLLLAGYADGHITVWDVQRSSVAKVITGEHTAPVVHTLFLGQDSQVT
RQFKAVTGDSKGLVLLHSFSVVPLLNRFSIKTQCLLDGQRTGTVLSASPLLFDEFSGGAS
QSAQGNGTVTGSSIGGMMGGVVGGDASWKLFNEGSSLVEEGVVVFVTHQTALVVRLTPNL
EVYAQLSKPDGVREGAMPCTAWKCTTQSRRLPANTENMPAEVVERVSLLAIAWDRKVQVA
KLVKSELKVYGKWSLESAAIGVAWLDDQMLVVLTMTGQLCLFAKDGTVIHQTSFSVDGFG
GDDLIAYHTHFVNIFGNPEKAYHNCVAVRGASVYVLGPMHLIVSRLLPWKERIQVLRRAG
DWMGALNMAMTIYDGQAHGVVDLPRTLVAVQEAIKSYLVELLLSYVEEVFSYISVALGNQ
IGIMDQVDDLNSKSSSVHSEIKEQYTRVGGVAVEFCVHIKRTDILFDEIFSKFVAVQQRD
TFLELLEPYILKDMLGSLPPEIMQVLVEHYSRKGWLQRVEQCVLHMDISSLDFNQVVRLC
REHGLYSALVYLFNKGLDDFRSPLEELLVVLQNSKKEGATALGYRMLVYLKYCFSGLAFP
PGQGTIPPLRLPSLRTELLQFLLEGSDAPNSRAGGGEYLNLYFLLELDTEATLDVLRCAF
IEDEISKPNVSSHDSADANMELPDGNNSMAQSQNSMVQNTVDTLIHIVSKGISQTDGSPS
NDETASTVEWPSKKDIGHLFEFIAYYVACGRANVSRHVLSQILEYLTSENNFPSWVSGDT
ITSKNREKQVLGLLEVVPETDWDSSYVLQLCEKARFYQVCGLIHNSRHQYLAALDCYMKD
VDEPIHAFSFINKTLLQLTDNESAAFRSEVISRIPELFDLNREGTFVLVIDHFTSEEGSH
ILSELRSHPKSLFLYLKTVIEVHLSGTLDFSSLRKDDLVRVKDQSKAVEAYLERICDFPK
LLRNNPVNVTDDMIELYLELLCQYERNSVLKFLETFDSYRVEHCLRLCQKYGITDAASFL
LERVGDVGSALLLTLSTLNEKFIKLDTAVGSLVSSGSARTEHFSNALKLEEVSDINSILH
ACIGLCQRNTHRLNPDESEALWFRLLDSFCEPLTDSLNAGRVSKGDDLKTVVAESLESEE
DEVAFIIEWRISKLHKGAHILRKVFSRFIKEIVEGMIGYVRLPTIMSKLLSDNGSQEFGD
FKFTILGMLSTYGFERRILDTAKSLIEDDTFYTMSILKKGASHGYAPRSQICCICDCLLD
KNSSSYIRIFNCGHATHLQCEVLENGTSSSSSSSGCPVCMPKKKSERSKNKSVLPEKSLV
KGFSSRTQQIHGTTVHPHESNASENTYGLHQISRFEMLTNLQRDRGLVEIENMPQLRLSP
PAVYHEKVQKGTVLSPAESSSDLARIGKQSKSKQPRVLKVNGSSLRFPLKSNIFSNGKEK
TSKR
NT seq
5775 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagaagctgattcaattggaaccacaattttccatggaattcgacctcgactcc
ttcctcaactcgcacctttccctctacgatgaagacgacgatgagaaccttaattctgtc
cctcaccgtacgatcgacgaaatcctcaacgactccgatttgtccgtgtcatcgtccccg
ccctccactatccatcgcctcgcatctgatcccaaaccacaacatccgcccaccgacgcc
gaatcagtctccagcactaaatccgacgagtccagtcaagtccggccgaggcccaatttg
tacacttgggtcaagtccggcgaattatcggacgatccggtcggaaaggttttgaagccg
tcgccatggttgcttggaggcatgagaacaaatgcgaagccaggggcggcgctcgcggct
gccgcggcggcctcgaggtcgatgcctacaccacacgcggccgcgatcaaatcgaagagg
agtgccgggagtggaattttccagaaggctctggagagtacggaattggatgataaatcc
gaggtaaggtccaattctaataatgatacgaatgtaggaagttcttctgaagtgactgag
tcaaattcaaatgaaggagaagtggattttggtgatgaattgttgagaaaaggtagggtt
tgggagagggagacggagttagaggaaacttctcaaggtattgaagtaagtgctgggaat
gctccggaagaagtgaaaaatgttagttttgatgagaatttgacaaatttagatgcaaat
gatgttaaagataatgaatttaacaataatgttgaggttgtagaggaatgtcaacaagaa
atacaagatatagatgaaaacagtcatggttccaaacatagtgatagtgaggaggagcgt
cttggtgatggtggtgctggcggtaatgataatgacggtgagggtggtggtggtggtgat
gatgacaataataatgatcgtgatagtgatgatgatggtgaattgggaagttcaatcact
caacttgtggaggagagaattgggcagttggagagcaggaggattagtaaaaaagctgaa
aagaaattgcaaaagcctctcgaaatcgctgaagagctagagaagaagcaagcttctact
gctttgcattgggaagaaggtgctgctgctcaacccatgaggcttgagggtgttcggaga
ggctctaccacattgggatacttcaatgtcgatgctaacaatcccattaccaggaccctt
tcagctccagcattacggcgtgatcatggttcaccacaagtcttggcggttcatagtaat
tacattgcaataggaatggcaagaggtgctattcttgttatccctagcaaatactctgct
cataatgctgatatcatggatgcaaagatgctaattcttggattgcaaggagaacgatct
tatgctgcagtgacttctatatgcttcaatcagcaaggggacctgctcttagcgggttat
gctgatggtcacattacagtttgggatgtacagaggtcatcggttgctaaagtaattact
ggagaacatacagctccagttgtacatacattgtttttggggcaggattctcaagttaca
cgtcaatttaaggcagttaccggtgatagtaagggtctggtactgttacattctttctct
gtggttcccctgcttaataggttctccattaaaacacagtgccttcttgatggacaaaga
acgggcacagtgctgtcagcttcacccctcctctttgatgaattctctggaggggcttca
caatctgctcagggaaatggtacagttacaggtagcagtattggtggtatgatgggggga
gtggtgggtggagatgcaagttggaaactcttcaatgagggatcttctttggttgaagaa
ggtgtggtcgtatttgtcacccatcaaactgctctggtggtaagactaacccccaatttg
gaagtctatgcacaactttcaaaaccagatggggttcgggagggtgccatgccttgtact
gcttggaaatgtacaacgcaatcacgccgtttacctgctaatactgaaaatatgcctgct
gaagtagttgaaagagtttcgctacttgcaattgcttgggatcgaaaagttcaggtggca
aagctggtcaaatcggagctgaaagtatatggtaaatggtctcttgaaagtgcagccata
ggtgtggcttggctggatgatcagatgctggtggttcttacgatgactggacaactttgt
ttgtttgcaaaggatggaactgtaattcaccaaacaagtttttctgtagacggttttgga
ggggacgatcttattgcttatcatactcacttcgttaatatatttgggaatcctgaaaaa
gcttatcacaattgtgtagctgtaagaggtgcttctgtatatgtacttggacctatgcat
cttattgtttcccggcttctcccatggaaggaacgaattcaagttttaaggagagcaggt
gattggatgggtgccttgaacatggcaatgacaatttatgatggccaagcgcatggtgtt
gttgaccttcccagaactctggttgctgtacaggaggccataaagtcctacctggttgag
ttacttttgtcatatgtagaggaagtattttcatatatatcagtagcattaggcaaccaa
attggaattatggatcaagttgacgacttaaacagcaaaagcagttctgtgcattctgaa
ataaaagagcaatacacccgtgtcggtggagttgcagttgaattctgtgtccatatcaag
aggactgacatactttttgatgaaatcttttccaagtttgtagctgttcaacagagagac
acatttttggagctgttggagccgtatatattgaaggacatgcttggttctcttccacct
gagattatgcaagtgctggtagagcattatagccgcaaaggatggttacagcgtgttgaa
caatgtgttctccacatggatatttcatccttggatttcaatcaggttgttaggttatgc
cgggagcatggattgtatagtgctctggtgtatctcttcaataaaggtttggatgatttc
aggtcacctttagaggaactgttggtggtcttgcaaaatagtaaaaaagaaggtgctact
gcccttggttaccggatgctagtttatttgaagtactgtttttcaggccttgcttttcca
ccgggacagggaacaattcctcctctacgcttgccatctctcagaacagaacttctgcaa
tttttgttagagggttctgatgctcctaattcaagagcaggaggaggagaataccttaac
ctgtattttctcttggagctagatactgaagctactttagacgttctgagatgtgcgttc
attgaagatgaaatctcaaaacccaacgtttcttctcatgattcagctgatgcaaatatg
gagctgccagatgggaataattcgatggctcaaagtcagaattctatggttcaaaataca
gtagatactctcattcatattgttagtaagggcatctcccaaacagatggatctcctagc
aatgatgagactgcatcaacagtagagtggccttcaaagaaagacattggtcatctgttt
gagtttattgcgtactatgttgcatgtggaagagctaatgtctcgagacatgtactgtct
caaattttggagtacttgacgtcagagaataactttccatcatgggtttctggagatacc
ataacttcaaaaaacagagagaagcaggttcttggtcttcttgaggtagtgcctgagact
gattgggattcatcttatgtgttacagctatgtgagaaagcacgattttaccaggtttgt
ggcctaattcataacagcaggcatcagtatcttgctgctctggattgctacatgaaagat
gtagatgaacccattcatgccttctcctttatcaacaaaacattattacagttgactgac
aatgaatccgccgcttttcgatcagaagtaatttctcgaattccagagctttttgactta
aacagagaaggcacattcgtcttggttatcgaccattttactagtgaagaaggttcacat
atcctctctgaacttcgttcccatccaaaaagcctattcctttacttaaaaacggtgatt
gaggttcacttatctggcacactcgacttttcaagtttaagaaaagatgatcttgtgagg
gtgaaggatcaatcaaaagcagttgaggcttacttggaaaggatctgtgatttcccaaag
cttttgcgtaacaatcctgttaatgtgactgatgatatgattgaactttatctggagctg
ttatgtcagtatgagcgcaattcagttctcaaattcctagagacttttgatagctatcgc
gtggaacactgtttacggctgtgccagaaatatgggataacagatgctgcatcattcttg
ttggaaagggttggtgatgttggcagtgctctattacttacactttccaccctcaatgaa
aaatttatcaagcttgatactgctgtgggaagtctggtatcaagtggttctgcacgtact
gagcatttcagcaatgctttaaaattggaggaggtgagcgacattaacagtatattgcat
gcctgtattggattgtgccaacggaacacccatcgtttaaatcctgatgaatcagaggca
ctctggtttagattactggactcgttttgtgagcctttaacggattcccttaatgctgga
agagtatctaaaggagacgatcttaaaacagtggtagctgagtcattggaatcagaagag
gatgaggtggcttttattatagagtggagaatctcaaagctccataaaggcgcacatatc
ttaagaaaagtgttctctcggttcatcaaggagattgttgagggcatgataggttatgtt
cgccttccaaccatcatgtccaaactactttctgataatggtagccaggaatttggtgat
tttaaattcacaatattggggatgcttagcacatatggcttcgaaagaagaattctggat
actgccaagtcactgatagaagatgatacattctacactatgagcatactcaagaagggg
gcctctcatgggtatgcccctcggagtcaaatatgttgtatatgtgattgtcttcttgac
aagaactcttctagctacattcgcattttcaattgcggtcatgcaacacatcttcaatgt
gaagttttggagaatggcacatcaagtagtagctcgtcctccggatgccctgtttgtatg
cctaagaagaaatctgagaggtccaaaaacaaatcggtccttccagagaagagtttagtg
aaggggttttcttcaagaacccaacaaatacacggaacaactgtccacccacatgaaagc
aatgcatcagagaatacctatgggcttcaccaaatatctcgatttgagatgttgaccaat
ttgcagagagaccgaggattggttgagattgaaaacatgcctcaactgaggctttcacct
ccagctgtgtatcatgaaaaggttcagaaaggaactgttctttcaccagcagaaagtagc
agtgatcttgcgagaatagggaaacaaagtaaatccaagcaacccagggtgctaaaagta
aatgggtcatctcttcggtttcccttaaagtcaaacatattcagtaatggcaaggagaag
accagcaagcggtga
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