Prunus mume (Japanese apricot): 103328722
Help
Entry
103328722 CDS
T03196
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 2-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03013
Nucleocytoplasmic transport
pmum03015
mRNA surveillance pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103328722
09122 Translation
03013 Nucleocytoplasmic transport
103328722
03015 mRNA surveillance pathway
103328722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103328722
03041 Spliceosome [BR:
pmum03041
]
103328722
03009 Ribosome biogenesis [BR:
pmum03009
]
103328722
03012 Translation factors [BR:
pmum03012
]
103328722
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103328722
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103328722
mRNA cycle factors
Stress granule specific factors
103328722
Spliceosome [BR:
pmum03041
]
Complex C
Other components
EJC/TREX
103328722
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
90S particles
Helicases
103328722
Translation factors [BR:
pmum03012
]
Eukaryotic type
Initiation factors
eIF-4
103328722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
CMS1
AAA_22
Motif
Other DBs
NCBI-GeneID:
103328722
NCBI-ProteinID:
XP_008229354
LinkDB
All DBs
Position
LG4:13378486..13380290
Genome browser
AA seq
336 aa
AA seq
DB search
MAAETARRQSGMLRQEKLELVTSDDIQPIASFDEMGLKNDVLRGIYQYGYEKPSAIQQRA
VRHIIDGHDVIAQAQSGTGKTSMIALSVCQMVDTSCREVQALILCPTRELALQTEKVILA
VGNFINIQVHACVGGKSVGEDIRKLENGVHVVCGTPGRVFDMIKRRTLSTRAIKLLVLDE
SDEMLSTVFKDQIYDVYRYLPPDLQVCLISATLPREILEMTNKFMTEPVRILVKRDELTL
EGIKQFFISVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKLRSNNFTVSSMH
GDMPQKEREAITQEFRSGNSRVLITTDVWARGLDVQ
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagagacagcaaggagacagagcggcatgttacggcaggagaagctggagttg
gtgacgtcagatgatatacagccaatcgcgagctttgatgagatgggactcaagaatgac
gtcctccgaggcatctaccaatacggctatgagaagccctccgccatccagcagcgggcg
gtgaggcacatcatcgacggccacgatgtgatagcgcaggcgcagtcgggtaccggcaag
acctccatgattgccctcagcgtttgccagatggtggacacctcctgcagagaggttcag
gcgttgatattgtgccctacgagggaattggcgttacagactgagaaggtgatcttagca
gttggaaacttcataaacatacaagtgcatgcttgcgttggaggcaaaagtgtgggtgag
gatatccgaaagcttgagaatggagttcatgtggtttgtggaactccaggtagagtcttt
gacatgatcaagaggagaactctaagcactcgagccattaaattattagttctcgacgag
tctgatgagatgttaagtacagtattcaaggatcagatttacgatgtctaccgatatctt
ccacctgacctccaggtttgcttaatttctgctacacttcctcgtgaaatcttggagatg
accaacaagtttatgactgaacctgtaaggatccttgtcaaacgtgatgagttgactttg
gagggaatcaagcaatttttcatctccgttgaaagagaagagtggaagtttgatacgctc
tgtgatctctatgatactcttacaattacacaagctgttattttctgcaacacaaagcga
aaggtggactggctcacagagaagctgcggagtaataactttacagtgtcttcaatgcat
ggagacatgccccagaaggagagagaagctatcacccaagagtttcgcagtggcaattct
cgggtcctcatcacaacagatgtttgggcacgaggccttgatgttcagtag
DBGET
integrated database retrieval system
