Prunus mume (Japanese apricot): 103328943
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Entry
103328943 CDS
T03196
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103328943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103328943
03012 Translation factors [BR:
pmum03012
]
103328943
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103328943
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103328943
Translation factors [BR:
pmum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103328943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
R3H
HA2_C
OB_NTP_bind
Ank_2
AAA_19
HA2_N
Ank_5
nSTAND3
ATPase
ResIII
AAA_22
AAA_23
NPHP3_N
Rad17
T2SSE
AAA_7
Motif
Other DBs
NCBI-GeneID:
103328943
NCBI-ProteinID:
XP_008229589
LinkDB
All DBs
Position
LG4:complement(15365259..15373230)
Genome browser
AA seq
1290 aa
AA seq
DB search
MAKKNRGGQQQNDKVTESMRSRIAQLLSRFNSADDEVYTFEAGLSNHDRAEVHQQCRKMG
MKSKSKGSGKKRVVSVYKPKKKAAAVDGIPKLTHLTFSEGTKEVLRDLFIRYPPGDEVEG
REMYGTNSNENVKAKRKKDSMFCKPLMTKAEIAKKVQSLASRIKDSDKLRKITKEKSKLP
ITSYRDVITSAVESHQVILISGETGCGKTTQVPQFILDHMWGKGEACKIVCTQPRRISAA
SVAERISKERGQNVGEDIGYKIRLENRGGRHSSIVLCTNGILLRLLVSRGAGRSKAGDSN
KETKQDVNDITHIIVDEIHERDHHSDFMLAIIRDMLSSHPHLRLILMSATVDAERFSHYF
GGCPIIRVPGFTYPVKTFYLEDVLSILKSVENNHLNTAVGLQNEDPDLTQELKLVLDEAI
NLAWSNDEFDPLLELTSSERTRKVFNYQHSLTGLTPLMVFAGKGRTGDVCMLLSFGADCQ
LQANDGATALELAQREEQRETADILKEHIENALSKSMKEQLLMDRYLQYFNPENVDFVLI
EQLLRKICSDSKDGAILVFLPGWDDIKKTQERLLMNPYFRNTSKVLIISLHSMVPSADQK
MVFKRPHPGCRKIVLSTNMAETAITIDDVVYVIDSGRMKEKNYDPFNNVSSLQSSWVSKA
SAKQRRGRAGRCQPGICYHLYSKVRAASLPDFQVPEIRRMPIEGLCLQVKLLDPDCNIED
FLIKTLDPPLSETIHNAVAVLQDIGALSLDEKLTVLGEKLGSLPVHPLTSKMLFFSILMN
CLDPALTLACATDFKDPFSLPMLPDDKKRAAAAKYELASLYGGHSDQLAVIAAFDIWKTA
KQRAQESLFCSQYFVSSSTMHMLSRMRKQLQSELIRHGFIPEDVSRCSLNARNPGILRAV
LVAGLYPMVGRLVPARKKMKRSVVETPNGVKVCLNNHSMNYKLAFKVNSDDRPLIMFDEI
TRGDAGVMNIRNCTVIGPLPLLFLSTEISVAPSNKDDDDGYIDEGSDMDDNEDESDEDAM
EIDGKSGGQHKEKIMSSPDNSVTVIVDRWLQFGSKALDVAQIYCLRERLSAAILFKVTHP
RKVLPPGLGASVYAIACALSYDGLSGISFPKESEEFLTSVENETVTDDPVAPLQDCYLHK
SIMCDMLRDDARGSNDTNEMHCYFLRSCTPAVNGAAKSRDPFSHSIPPPLDSAILNAHQK
PLSQGTGRPAANGAVRFYVIGNGAAKLSDPSSQSVQPPLDSAPITAHQKPPSQGPNLVGN
GESTDASDGPRGESPLKRKKRRNRGREQSS
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagaacagaggcggccaacaacaaaacgataaagttacagaaagcatgagg
tcccgaatagctcaattactctcccgcttcaattctgctgatgacgaagtttacacattt
gaggccggtctctcgaaccatgaccgtgctgaagtgcatcaacaatgcaggaaaatgggt
atgaaatccaagagtaaagggagtgggaaaaaacgtgttgtgtctgtttataaacctaaa
aagaaggctgcagctgttgatggtattccaaagctcactcatctgacattttccgaaggc
acaaaagaagtattgagggacttgttcatccgatacccacccggtgatgaagtggagggc
agagaaatgtatgggacaaatagtaatgagaatgtgaaggccaagcggaagaaagacagt
atgttttgcaagcctttgatgaccaaggcagaaattgcaaagaaagtgcaatcacttgct
tctagaataaaggattccgataaattgagaaagatcaccaaagagaagtctaagcttcca
attacatcctacagggatgtcattacatcagcagttgaatctcatcaggtaattcttata
tctggtgagactgggtgcggaaagaccacacaggtcccacagtttattttggaccatatg
tggggtaagggggaggcatgtaaaatagtgtgcactcaacctcgacgtatctcagctgca
tcagttgccgagagaatctctaaggaaagaggacaaaatgttggagaggatattggatac
aagatacggttggaaaatcgaggtggcaggcactcatcaattgtgctctgcacaaatggg
attctgttgaggttgttagtgtccagaggcgctggtagatcaaaagcaggtgactcaaac
aaagaaaccaagcaagatgtcaatgacataactcacattattgtggatgaaattcatgaa
agggatcaccactcagattttatgctggcaattataagagacatgctttcttcacaccct
catctacgtctgatactgatgagtgcaactgttgatgctgaacggttttcacattatttt
ggtggatgcccaattatccgtgtccctgggttcacttatcctgtcaaaactttctatttg
gaggatgtactttctatcctgaaatccgtagaaaataatcaccttaatactgcagtaggc
ttacagaatgaagatcctgacttaacacaggaattgaagcttgttctagatgaagctatt
aatctggcttggtctaatgatgagtttgatccccttctagagttgacttcttctgaaaga
actcgcaaagtctttaattatcagcattctttaaccggacttacgccgttaatggtgttt
gctggaaagggtagaacaggagatgtttgcatgctgctatcttttggtgcggactgccaa
ttacaggccaatgatggagcaactgcattggagttggctcaacgggaagagcagcgagaa
actgctgatatattgaaagagcatattgaaaatgctctaagtaagtctatgaaagaacaa
ctgttaatggatagatatctccaatattttaatcctgaaaatgttgattttgttcttatt
gagcaattattaaggaaaatttgtagtgattcaaaagatggagccatccttgtgttcctt
ccagggtgggatgatataaaaaaaacccaggagagattactcatgaacccatatttcaga
aatacttctaaggttttgataatatctctacattcgatggttccatctgctgaccaaaag
atggtcttcaaacgcccccatcctggttgccgtaaaattgttctttcaactaatatggct
gaaactgccatcaccatcgatgatgtcgtttatgttattgatagtggccggatgaaagaa
aaaaattatgatcctttcaataatgtatcaagtcttcaatcttcttgggtgtcaaaagcg
agtgccaagcaacgacggggccgtgctggtcgttgtcagcctggaatctgttatcatctt
tattctaaagttcgagcagcttcattgccagattttcaggtgcctgagattaggagaatg
ccaattgaagggctttgcctgcaggtgaagttacttgatccagattgcaatatagaagat
ttcttgattaagacattggatcctccactttccgagaccatacacaatgcagttgctgtt
cttcaggatattggggctttgtcacttgatgagaaacttacagtacttggggagaagcta
ggttctctacctgttcatccattgacgagcaagatgcttttcttttctatactgatgaac
tgtcttgacccagctttgactctggcatgtgctactgacttcaaggatccattttccctg
cctatgttacctgatgataagaagagagccgctgctgctaaatatgaacttgcttcattg
tatggtgggcatagtgatcagctagcagtcatagcagcatttgacatatggaagactgct
aaacaacgagctcaagagagtctgttctgttctcaatactttgtgtcttcaagtacgatg
catatgctatctcgtatgcgcaagcagctccagagcgagctaattcggcatggttttatt
cctgaggatgtatcaagatgtagcttgaatgcacgtaacccaggaatactccgtgctgtt
ctcgtggccggtttatatccaatggtggggagattggttcctgctcgcaagaagatgaaa
cgatctgttgtagaaactcctaatggggttaaagtttgtttaaacaaccactctatgaat
tataagttagctttcaaggttaacagtgatgatcgtccattgattatgtttgatgagata
acccgtggggatgcgggtgtgatgaacatacggaactgtactgttattgggccacttccg
ttactatttctttctacagaaatttctgttgctccatctaacaaggatgatgatgatggt
tacattgatgaggggagtgatatggatgacaatgaggatgaaagtgatgaagatgcaatg
gagatagacggtaagtcaggtggacagcacaaggagaaaattatgtcatctcctgataat
tcagtcacagttatagtggatcggtggcttcagtttgggtcaaaagctctggacgttgct
cagatctactgcttgagagaacgtttatctgcagcaatcttattcaaagttacacatcca
aggaaagttttgcctcctggtcttggggcctcagtttatgctatagcctgtgctctatcg
tatgatggtctatctgggatctcatttccaaaggaatccgaggagtttctgacttcggtg
gaaaatgaaactgtgaccgacgaccctgttgcgccccttcaggattgctacttacacaaa
tcgattatgtgcgatatgttaagggatgatgcacgtggaagcaatgacacaaatgaaatg
cactgttacttcctcagatcgtgtactcctgccgtcaatggggcagcaaagtcgagggac
ccgtttagtcacagtatccccccaccccttgattcagctatactgaacgcacaccagaag
cctctatcacaaggcacgggtagacctgctgctaatggagcagtacggttttatgtgata
ggaaatggggcagcaaagttgagtgacccatcaagtcagagtgttcaaccaccgcttgat
tctgctcccatcaccgctcaccagaagcctccatcacaaggtccaaatttagttggtaac
ggtgaaagcactgatgcatcagatggtccaagaggagagtcgccactgaagaggaagaag
cgtaggaataggggtagagaacaatcatcttga
DBGET
integrated database retrieval system
