Prunus mume (Japanese apricot): 103329241
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Entry
103329241 CDS
T03196
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103329241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmum04131
]
103329241
Membrane trafficking [BR:
pmum04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
103329241
Hops complex
103329241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
VPS11_C
zf-C3H2C3
zf-C3HC4_2
zf-RING_6
zf-RING_2
zf-RING_5
OCRL_clath_bd
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
103329241
NCBI-ProteinID:
XP_008229898
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All DBs
Position
LG4:complement(16995173..17001152)
Genome browser
AA seq
951 aa
AA seq
DB search
MYQWRKFEFFEKKLAGKCSIPEEVSGRIECCSSGRGKVVIGCDDGTVSFLDRGLNFSYGF
QAHSSSVLFLQQLKQRNYLVTIGEDEQITPQQSAMCLKVFDLDRMQSEGTSSSSTSPDCI
GILRIFTNQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLEVDN
LSDKSLSSVTGLGFRVDGQALQLFAVTPSSVSLFILQNKTSRGQTLDQIGSNANSVAMSD
RSELIIGRPEAVYFYEVDGRGPCWAFEGQKKFLGWFRGYLLCVIADQRNGYDTFNIYDLK
NRLIAHSLVVKEVSHMLCEWGNIILIMADKSALCIGEKDMESKLDMLFKKNLYTVAINLV
QSQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLT
NYLEKLHEKGLASKDHTTLLLNCYTKLKDVDKLNVFIKSEDGVGEHKFDVETAIRVCRAT
NYHEHAMYVAKKAGKHEWYLKILLEDLGRYEEALQYISSLEPSQAGVTVKEYGKILVEHK
PVETIEILMRLCTEDGESGKRRAANVAYLNMLPSPVDFLNIFIHHLPSLMDFLEKYTNKV
KDSPAQVEIHNTLLELYLSNDLSFSSISQASNGEDLNLRARSGATATSRSGSNGKFIADG
KDSNKVKDRLEKQEKGLRLLKSAWPSELEHPLYDVDLAIILCEMNEFKEGLLYLYEKMKL
YKEVIACYMQAHDHEGLIACCKRLGDSGKGGDPTLWADLLKYFGELGEDCSKEVKEVLTY
IERDDILPPIIVLQTLSRNPCLTLSVIKDYIARKLEQESKLIEEDRRAIEKYQETTSAMR
KEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCIHSFHQRCLGDNEKECPVCAPEYKSV
LETKRSLEQNSKDQDRFFQQVKSSKDGFSVIAEYFGKGVISKTSSGPTGGS
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgtaccagtggaggaaattcgagttcttcgagaagaaattggcgggaaagtgctcgatt
cccgaggaagtgagcggacggatcgagtgttgctcgagcggcagagggaaggtggtgatc
ggttgcgacgacggcaccgtgagcttcctcgaccgcggcctcaacttcagttatggcttt
caagctcactcctcctccgtactcttccttcagcagctcaagcaacgcaactatttggtg
acaatcggagaagatgagcaaattactccgcagcaatcggcaatgtgccttaaggttttc
gacctggatagaatgcagtcggagggcacgagctcgagctcaacgagccctgattgcatt
gggatcttgaggatattcaccaaccaatttcctgaagcaaagattacgtcgtttctagta
ctagaggaagcacctccaatactgcttatagctattggcttagataatggttgcatttac
tgcattaaaggggatattgcgcgagaacgtatcaccaggttcaagcttgaggttgataat
ctctctgacaagagcttgtcctcggtgacgggactggggttcagagtagatggtcaggcc
cttcagttgtttgccgtgactccatcttctgtgagcttgttcatcttgcagaataaaact
tcaagggggcaaaccctagatcagattggaagtaatgccaacagtgttgccatgagtgat
cgctcggagttgataattggtcgacctgaggctgtgtatttttatgaagttgatgggcga
ggcccttgttgggcttttgaaggacaaaagaaatttttggggtggtttcgtggatacctt
ctgtgtgttattgcagatcaaagaaatggctatgatactttcaacatttacgacctgaag
aaccgtctaattgcccacagcctagtggttaaagaggtttctcacatgctttgtgaatgg
ggtaacataatacttataatggctgacaagtcagctttgtgcatcggggagaaggatatg
gagagcaagttagatatgctctttaagaaaaatctttatactgttgccatcaaccttgtt
cagagtcagcaagcggatgctgccgcaactgcggaagtgctaagaaagtatggggatcat
ctgtatagcaagcaagattatgatgaggcaatggctcagtacatccataccattggtcac
cttgagccttcttatgtgatacagaagtttctagatgcacaaagaatctacaaccttaca
aattacttggaaaaattgcatgagaaggggcttgcttctaaagatcataccactcttcta
ctgaattgctacaccaaattgaaagatgttgacaagctgaatgtgttcattaaaagcgag
gatggtgttggagaacataagtttgatgtggagactgcaataagagtctgccgtgcaacc
aactaccatgagcatgcaatgtatgttgctaaaaaggcagggaagcacgaatggtactta
aagatcttacttgaagaccttggccgatatgaggaagccttgcaatatatttcaagcctt
gaaccaagccaagctggagtgacagtgaaagagtatggtaaaattctcgtagagcacaag
cctgttgagacaattgagatacttatgaggctgtgcactgaagatggagaatcaggcaag
agaagagctgctaatgttgcatacttaaatatgttgccatctcctgttgattttcttaac
atcttcatccatcatctgccgtcgcttatggattttcttgaaaagtatactaacaaggtg
aaggactctcctgctcaagtagaaatccataacacactcttggagttgtacttgtccaat
gacttgagcttctcatcaatatcacaagctagcaatggtgaagatctaaatctcagggct
agatcaggtgcaactgcaacgtcaagatcagggtccaatgggaaatttattgctgatggc
aaagattcaaataaggtaaaggaccgtctggaaaagcaagagaaagggctacgactgctt
aagagtgcatggccatctgagctggaacatccactttatgatgttgatcttgccataatc
ctttgtgaaatgaatgaatttaaggaaggccttctctatctatatgaaaaaatgaaactc
tataaagaggtgattgcttgctacatgcaagctcatgatcatgagggtttgattgcatgc
tgcaaacgactaggggattcaggtaagggtggggacccaactctgtgggcagatctgcta
aaatattttggtgaacttggagaagattgctccaaggaagtgaaggaagttttgacatat
atagaaagggatgacatcttgccgcctattattgttcttcaaacactgtccagaaatcca
tgtctcacactctctgtcattaaggattacattgctcgaaagcttgaacaagaatcaaag
ttgatcgaagaggaccgtcgagctattgagaagtatcaggaaaccacatcggcaatgaga
aaagaaattcaggatcttaggacaaatgctagaatttttcagctcagcaagtgcactgca
tgtactttcactcttgatctcccagctgtgcattttatgtgcatccactcattccatcag
cgatgcctcggcgataatgagaaagaatgtcctgtatgtgctccggaatacaagtctgtg
ctagaaacgaaaagaagtttagagcagaactccaaagatcaggatcgattcttccagcaa
gttaaaagttcgaaggatggtttttctgtgatcgctgagtattttgggaagggggtcatt
agcaaaaccagtagtggacccacaggtggttcttga
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