Prunus mume (Japanese apricot): 103329249
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Entry
103329249 CDS
T03196
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103329249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103329249
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
103329249
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
103329249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
103329249
NCBI-ProteinID:
XP_008229909
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All DBs
Position
LG4:complement(17061848..17064445)
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AA seq
287 aa
AA seq
DB search
MVGLSIGEKHFIQGGIAQDLRSDGRKRLTTRPIYVETGVISQANGSARVRMGATDVIASV
KAELGRPNALQPDKGKVVVNVDCSPTAAPMFEGRGGEELSAELSVALQCCLLGGKSGSGA
GIDLSSLVVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPKVNVAAGASGN
EQPEVDVSDEEFLQFDTSRVPVIVTLTKVGRHYIVDATSEEESQMSSAVSISINRQGHIC
GLTKRGGAGLDPSIILDMISVAKTVSEQLINTLDSHIAAAEAGEEES
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggtgggactatccataggagaaaagcattttatacagggtggcattgctcaggatctt
cgttctgatggccgaaaaagactgacgactcgacctatctatgttgaaaccggagtcatt
tctcaggcaaatggttcggcaagggtcaggatgggtgccacagatgtcattgccagtgtg
aaggctgaacttggaaggccgaatgcgttgcaacctgacaaaggaaaggtcgttgtaaat
gttgattgcagtcccactgcagcaccaatgtttgagggtagagggggtgaggagctgtca
gcagaactctcagttgctcttcaatgttgtctcttgggtggtaaaagtggatctggtgct
ggaattgatctctcctctctggttgttgtggaaggaaagatctgttgggatctttacatc
gatggccttgttgttagttcagatgggaatctgctagatgccctaggtgctgctataaag
gctgctttgagtaatacaggcatcccaaaagtaaatgttgcagccggtgcatcaggcaat
gagcaaccagaggttgatgtaagcgatgaggaatttctccaatttgacacatctagggtt
cctgtcatagttacattaacaaaggtaggtcggcactatattgtagatgccacttcagaa
gaggaatcacaaatgagctcggctgtttctatttccatcaataggcaaggccacatttgt
gggttgaccaaacggggcggtgccggcctagatccaagcatcattcttgacatgatatct
gtggcaaaaacagtaagtgagcagctgataaacactttggattctcacatagctgctgct
gaagctggcgaagaggagtcgtga
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