Prunus mume (Japanese apricot): 103329259
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Entry
103329259 CDS
T03196
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmum03016
]
103329259
Enzymes [BR:
pmum01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
103329259
Transfer RNA biogenesis [BR:
pmum03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
103329259
Prokaryotic type
103329259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
103329259
NCBI-ProteinID:
XP_016649216
UniProt:
A0ABM1LP89
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All DBs
Position
LG1:971999..975489
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AA seq
488 aa
AA seq
DB search
MAISSLRLPFSLWLPRLPIQSFRFSKPILPLRLNLIYCSSSISSTAQQTSTHLDKWQSVR
KKKVVLRVGYVGSDYRGLQMQRDEHSLSTIEKELETAIFNAGGIRDSNLGNLNKIAWARS
SRTDKGVHSLATMISFKMEIPEKAWDGDPYGVALVNHINYYLPHNIKVFSILPAQRSFDP
RKECNLRMYSVLPHADVIGIKSHFSAAEIDYHISDFNSILNCFEGEHPFHNYTIRSKYRR
KLPVKKSRRHGSVSITGRSTGEASASEYEESDVDENLDGTKTPESDAEVLNQNSSPSSNS
EGNLRNACEKQGDGGNDQSAGSVIRARWLYEPDERDRISASHFRKIFRCSCGKLEKSLGH
DYVELSISGESFMLHQIRKMIGTAVAIKRKLLPRDILTLSLAMFSRIILPLAPSEVLFLR
GNRFSIRGRPGNVTRPEMMAMVESEEIIKAVDEFYTSVMLPEVSKFLEPSGYPWKEWVEN
LDRNTGIP
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggccatctcttctctgcgtctcccgttctcgctgtggcttccaagactaccaattcag
agcttccgtttctcaaaaccaattttacccctaagattgaaccttatttactgctcctcc
tctatctcctctactgctcaacaaacctcaacccaccttgacaaatggcaatccgttcga
aagaagaaagtggttctccgggtcgggtacgtcggctccgattaccgaggcttgcaaatg
caacgagacgaacattcattatctactattgaaaaagaactggaaacggccatattcaat
gccggcggtatccgcgatagtaatctcgggaaccttaacaagattgcctgggccagaagt
agccgaacagataaaggagttcactcattagcgacgatgatatcatttaaaatggaaatc
ccggagaaagcatgggatggagacccttatggcgttgcccttgtgaatcacattaactat
tatcttcctcataatatcaaagtttttagcattttgcctgcacagaggagctttgatcct
agaaaggagtgtaatctccgcatgtattcagtcctcccccatgctgatgttattggaatc
aaaagccacttcagcgcagcagaaattgattatcacatctcagacttcaatagtatacta
aattgtttcgagggagagcatccttttcataattataccatacgatctaaatacaggagg
aagcttcctgtaaaaaaatcacgtagacatggaagtgtgtcaataacagggagatcaact
ggagaggcatcagcctctgagtatgaggaaagtgatgtggatgaaaatttggatggaaca
aagacaccagaatcagatgccgaggtactgaaccaaaattcttcaccgtctagcaatagt
gagggcaacttacgcaatgcttgcgagaagcagggagatggtggcaacgatcaaagtgct
ggttcagtcatccgtgcaagatggttatatgaacctgatgaaagagatagaataagtgct
tctcatttcagaaagatttttcgctgttcttgtgggaagctagagaagtcgcttggacat
gattatgttgagctttccatttcgggagagtctttcatgttacatcaaattcgcaaaatg
attggaactgccgtggccataaagcgcaagttactcccaagagatattttgacattatca
ctggccatgttctcacggataatcctaccacttgccccatctgaagttttgtttttaaga
ggaaacagattttcaatcagaggacgacctggaaatgtaacaaggcctgaaatgatggca
atggttgaatcagaagaaattattaaggctgttgacgagttctacacatctgttatgttg
cctgaagtttcaaagttcttagaaccttcaggatatccttggaaagaatgggttgaaaac
ttagatagaaacacaggcattccctga
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