Prunus mume (Japanese apricot): 103329516
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Entry
103329516 CDS
T03196
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
103329516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmum04131
]
103329516
Membrane trafficking [BR:
pmum04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
103329516
Hops complex
103329516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_Vps41
zf_RING_Vps8
zf-RING_11
zf-RING_UBOX
zf-rbx1
zf_RING_Vps8_fungal
zf-C3HC4
zf-C3HC4_2
Nup54_57_C
zf-RING_5
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
103329516
NCBI-ProteinID:
XP_016649462
LinkDB
All DBs
Position
LG4:complement(18845771..18856525)
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AA seq
987 aa
AA seq
DB search
MDSGRQVFTVDLLERYAAKGRGVITCMAAGNDVILLGTSKGWIIRHDFGLGDSYDIDLSA
GRPGEQSIHRVFVDPGGSHCIATVVGSGGSDTFYTHAKWTKPRILTKLKGLVVNAVAWNR
QQITEASTKEVILGTDNGQLHEMAVDEKDKKEKYVKFLFELLELPEAFMSLQMETGTIXS
VSTFDIVSVSLTRLYAFTGIGSLETVFASYLDHVVHFMELPGEIPNSELHFYIKQRRAVH
FAWLSGAGIYHGGLNFGAQHSSPNGDENFVENKALLNYSSLSEGAELVKPSSMTVSEFHF
LLLIGNKVKVVNRISEQIIEELQFDQTPESVSRGVIGLCSDATAGLFYAYDQNSVFQVSV
NDEGRDMWKVYLDMKEYAAALANCRDPLQRDQVYLVQAEAAFASKDYLRAASFYAKINYI
LSFEEITLKFITVNEQDALRTFLLRKLDSLAKDDKCQITMISTWATELYLDKINRLLLED
DTALDNRNSEYHSIMKEFRAFLSDCKDVLDEATTMRLLESYGRVEELVFFASLKELHEIV
VHHYIQQGEAKKALEVLQKPSVPIDLQYKFAPDLIMLDAYEAVESWMATNNLNPRKLIPA
MMRYSSEPHARNETHEVIKYLEYCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQFKF
GKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEAD
KVEDDEDLRKKLWLMVAKHVIEQEKGAKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNNQIELLKQEMNDATHGADNIRNDISALAQRYAVIDRDEECGVCQ
RKILTVRREYQLARGYTSVGQMAPFYVFPCGHAFHAECLIAHVTRSTNESQAEYILDLQK
QLTLLDGEARKDTNGSLTEETITSMAPVDKLRSQLDDAVASECPFCGDLMIREISLPFIL
PEEQQQNNSWEINSRNLGNQRSLSLSL
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggattcagggaggcaggtgttcacggtggatcttctagaaagatatgccgccaagggg
cgcggagttatcacctgtatggctgccggaaacgacgtcattttattgggaaccagtaaa
ggttggatcattcgacacgattttggcctcggcgattcatatgatattgatctctcggcg
ggtcgtcctggggagcaatccatccatagagtttttgttgatcctggagggagccactgt
attgccactgttgttggtagtgggggttctgatacgttctatactcatgcaaaatggacc
aagcctcgtattttaaccaagctcaagggtcttgttgtaaatgccgtcgcctggaacaga
caacagataacagaagcttcgacaaaggaagtcattctcggtacagacaatggccaactt
catgaaatggctgtggatgagaaggataagaaggagaaatacgtgaagtttctttttgaa
ctattagaacttccagaggcctttatgagtttgcagatggaaactgggaccattnnnagt
gtatctacatttgatatagtgtctgtatctcttacacgactctatgcttttactggtatt
ggatcgctggaaaccgtttttgctagttacttggatcatgtggtgcatttcatggaactt
cctggtgaaatacctaacagtgaactgcatttctatatcaagcaaaggagagcggtacat
tttgcatggctttctggtgctggtatctatcatggtggtttaaattttggggcacaacat
agttctcctaatggagatgaaaattttgtggagaacaaggctcttttgaactattcaagt
ttgagtgagggtgctgaattggtgaaacccagttctatgacagtttcagaatttcatttc
ttgcttcttatcgggaataaggttaaggttgtaaacagaataagtgagcaaattattgag
gaacttcagtttgatcaaacacctgagtcagtttcaaggggtgtcattggattgtgcagt
gatgccactgctgggttgttctatgcatatgatcaaaactctgtatttcaggtgtctgtt
aatgatgaaggccgagacatgtggaaagtctacctggacatgaaagagtatgctgctgct
ctggcaaattgtcgtgacccacttcaacgggaccaagtatatttggtgcaggctgaagct
gcatttgcctccaaggattatcttagagcagcatctttctatgcaaagattaattatata
ttatcattcgaggagatcactctgaagttcatcactgtaaatgaacaggatgctttgagg
acctttctattgcggaaacttgatagccttgcgaaggatgacaaatgccaaataacaatg
atttcaacatgggcaactgaattgtacttggataagataaatcggctactattggaagat
gacactgcgttagataatcgtaattcagagtatcactcgatcatgaaagaatttcgtgca
tttcttagtgactgcaaggatgtattggatgaggcaactaccatgagacttttagaaagt
tatggtcgagttgaagagttggtgtttttcgctagtctgaaggaactgcatgaaattgta
gttcaccattatattcagcaaggggaggcaaagaaagcattggaggtgcttcaaaaacct
tctgttcctatagatcttcagtacaagtttgccccggacctcatcatgctagatgcatat
gaagctgtagagtcatggatggcaacaaacaacctcaacccaaggaaactcattcctgca
atgatgcgttattcaagtgaaccacatgcaagaaatgaaacacacgaagtcatcaaatat
ttggaatactgtgttcatcgtttgcataacgaggatcctggagttcacaacttgctatta
tcgctatatgccaagcaggaagatgacagtgcacttttgcgtttcctacaattcaagttt
ggaaaaggacgggaaaatggcccagagttcttctatgatcccaagtatgctttacgcctt
tgcctcaaggaaaagcgaatgcgtgcctgtgttcatatatacagtatgatgtctatgcat
gaagaagcagttgctcttgccctacaggttgatcctgagcttgctatggctgaagctgac
aaggttgaagatgatgaggacttgagaaagaagctttggctcatggttgcgaagcatgtt
atagaacaggaaaagggagctaaaagggagaacatacgaaaggcaatagcatttcttaaa
gaaactgatggccttttaaagatagaggatatattaccattctttccagattttgccctg
attgatgacttcaaggaggcaatttgctcatcattagaggattacaacaatcaaatcgaa
ctactgaagcaggagatgaatgatgcgacacatggtgcagataacattagaaacgacatt
agtgcactggctcagagatatgctgtgattgatcgtgatgaagaatgtggggtttgtcag
cgtaaaattttaactgtgcgtagggagtatcagttggctaggggctatacatcagtaggc
caaatggccccattttatgtctttccatgcggacatgccttccatgcggaatgcctgatt
gcccatgtcacacgtagtacaaatgaatctcaagcagagtatatactggatctgcagaag
cagcttactctacttgacggggaagctaggaaggatacaaatggtagcctaactgaggaa
accataacaagcatggcgcctgtagataagctccgatcacagttggatgatgccgtcgcc
agcgaatgcccattttgtggggacctaatgatccgtgagatctctctgcctttcatcctg
ccagaggagcaacagcagaataattcatgggagataaattcacgtaatcttggaaaccag
aggagcctgtccttaagtttatga
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