KEGG   Prunus mume (Japanese apricot): 103329678
Entry
103329678         CDS       T03196                                 
Name
(RefSeq) ubiquitin receptor RAD23d
  KO
K10839  UV excision repair protein RAD23
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03420  Nucleotide excision repair
pmum04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    103329678
  09124 Replication and repair
   03420 Nucleotide excision repair
    103329678
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:pmum03051]
    103329678
   03400 DNA repair and recombination proteins [BR:pmum03400]
    103329678
Proteasome [BR:pmum03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    103329678
DNA repair and recombination proteins [BR:pmum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      103329678
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin Rad60-SLD UBA_7 CUE UBA_RAD5A Dsc3_N Rad60-SLD_2 UBA_3 Permuted_GreAB-C
Other DBs
NCBI-GeneID: 103329678
NCBI-ProteinID: XP_008230399
LinkDB
Position
LG4:complement(19992731..19997307)
AA seq 385 aa
MKVFVKTLKGTNFEIEVKPEEMVSDVKKIIETVQGADVYPASQQMLIHQGKVLKDTTTLE
ENQVAENSFIVVMLTKNKASPSGASSTKGAATSQAQPASTPTSTTPPVATPAPVRAVAES
QPVVETPAVAAPTDSSRSDVYGQAASNLVAGTNLEATVQQILDMGGGSWDRDTVVRALRA
AFNNPERAVEYLYSXIPEQAEVPPAAQVPVGEQAANPQAANPPAQAPQPVVPTGGPNANP
LDLFPQGLPNMGANAGAGNLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQNPHLMQL
IQAHQADFLRLINEPVEGGEGNLLEQLGAAVPQAVTVTPEEREAIERLEAMGFDRALVLE
VYFACNKNEELAANYLLDHMHEFEE
NT seq 1158 nt   +upstreamnt  +downstreamnt
atgaaggtttttgtcaagactttgaagggcactaacttcgagatcgaagtgaaacccgaa
gagatggtttctgatgtcaagaaaattatagagaccgtacagggtgcagatgtgtaccct
gcctcacaacagatgcttattcatcaggggaaagttcttaaggacaccacaactctagaa
gaaaatcaagttgctgaaaatagttttattgtggtaatgttaaccaagaataaggcatca
ccaagcggagcctccagtacaaaaggggcagccacaagtcaggctcaacctgctagtact
cctacttcgacaaccccaccagtagcaactccagctcctgtgcgagctgtggcagagtca
cagcctgtcgttgagactcctgctgttgcagctcccactgattcttcaagatcagatgtg
tatggccaagctgcatcaaatcttgttgcaggaactaatttagaggcaaccgttcagcag
attctagatatgggcggaggaagttgggatcgtgatacagttgtccgtgctttacgtgct
gctttcaacaaccctgaaagggccgttgagtatttatattctgncattcctgaacaagct
gaagtcccaccagcagcccaagttcctgttggtgaacaagcagcaaatcctcaggcagca
aatcctccagcccaggctccacaaccagtagtgcctactggcggtccgaatgcaaatcca
ctagacctgtttccacagggccttcccaatatgggtgcaaatgctggtgcaggcaatttg
gatttcctgcgcaacagcccacagttccaagctttgcgagctatggtgcaagcaaaccct
caaattctccagcctatgcttcaagagttggggaaacaaaatccacatctaatgcagctc
attcaagcacatcaagctgacttcttacgcttgataaatgagcctgttgaaggcggtgaa
gggaacctattggagcagttgggtgcagcagtgccacaggctgtgaccgtcacccctgag
gagcgagaggccatcgaacgtcttgaagctatgggtttcgatcgggcccttgtgttggag
gtatactttgcatgcaacaagaatgaggagctggcggccaactatcttttggatcacatg
catgagtttgaggaatga

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