Prunus mume (Japanese apricot): 103329678
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Entry
103329678 CDS
T03196
Name
(RefSeq) ubiquitin receptor RAD23d
KO
K10839
UV excision repair protein RAD23
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03420
Nucleotide excision repair
pmum04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103329678
09124 Replication and repair
03420 Nucleotide excision repair
103329678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
pmum03051
]
103329678
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103329678
Proteasome [BR:
pmum03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
103329678
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
103329678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
UBA_7
CUE
UBA_RAD5A
Dsc3_N
Rad60-SLD_2
UBA_3
Permuted_GreAB-C
Motif
Other DBs
NCBI-GeneID:
103329678
NCBI-ProteinID:
XP_008230399
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Position
LG4:complement(19992731..19997307)
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AA seq
385 aa
AA seq
DB search
MKVFVKTLKGTNFEIEVKPEEMVSDVKKIIETVQGADVYPASQQMLIHQGKVLKDTTTLE
ENQVAENSFIVVMLTKNKASPSGASSTKGAATSQAQPASTPTSTTPPVATPAPVRAVAES
QPVVETPAVAAPTDSSRSDVYGQAASNLVAGTNLEATVQQILDMGGGSWDRDTVVRALRA
AFNNPERAVEYLYSXIPEQAEVPPAAQVPVGEQAANPQAANPPAQAPQPVVPTGGPNANP
LDLFPQGLPNMGANAGAGNLDFLRNSPQFQALRAMVQANPQILQPMLQELGKQNPHLMQL
IQAHQADFLRLINEPVEGGEGNLLEQLGAAVPQAVTVTPEEREAIERLEAMGFDRALVLE
VYFACNKNEELAANYLLDHMHEFEE
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtttttgtcaagactttgaagggcactaacttcgagatcgaagtgaaacccgaa
gagatggtttctgatgtcaagaaaattatagagaccgtacagggtgcagatgtgtaccct
gcctcacaacagatgcttattcatcaggggaaagttcttaaggacaccacaactctagaa
gaaaatcaagttgctgaaaatagttttattgtggtaatgttaaccaagaataaggcatca
ccaagcggagcctccagtacaaaaggggcagccacaagtcaggctcaacctgctagtact
cctacttcgacaaccccaccagtagcaactccagctcctgtgcgagctgtggcagagtca
cagcctgtcgttgagactcctgctgttgcagctcccactgattcttcaagatcagatgtg
tatggccaagctgcatcaaatcttgttgcaggaactaatttagaggcaaccgttcagcag
attctagatatgggcggaggaagttgggatcgtgatacagttgtccgtgctttacgtgct
gctttcaacaaccctgaaagggccgttgagtatttatattctgncattcctgaacaagct
gaagtcccaccagcagcccaagttcctgttggtgaacaagcagcaaatcctcaggcagca
aatcctccagcccaggctccacaaccagtagtgcctactggcggtccgaatgcaaatcca
ctagacctgtttccacagggccttcccaatatgggtgcaaatgctggtgcaggcaatttg
gatttcctgcgcaacagcccacagttccaagctttgcgagctatggtgcaagcaaaccct
caaattctccagcctatgcttcaagagttggggaaacaaaatccacatctaatgcagctc
attcaagcacatcaagctgacttcttacgcttgataaatgagcctgttgaaggcggtgaa
gggaacctattggagcagttgggtgcagcagtgccacaggctgtgaccgtcacccctgag
gagcgagaggccatcgaacgtcttgaagctatgggtttcgatcgggcccttgtgttggag
gtatactttgcatgcaacaagaatgaggagctggcggccaactatcttttggatcacatg
catgagtttgaggaatga
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