KEGG   Prunus mume (Japanese apricot): 103329811
Entry
103329811         CDS       T03196                                 
Name
(RefSeq) WD repeat-containing protein 82 isoform X4
  KO
K14962  COMPASS component SWD2
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103329811
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmum03019]
    103329811
   03036 Chromosome and associated proteins [BR:pmum03036]
    103329811
Messenger RNA biogenesis [BR:pmum03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     103329811
Chromosome and associated proteins [BR:pmum03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     103329811
    COMPASS/SET1 complex (yeast)
     103329811
SSDB
Motif
Pfam: WD40_Prp19 WD40 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WDR55 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_Nup120_160 Beta-prop_NUP159_NUP214 NBCH_WD40 Beta-prop_NWD2_C WD_LRWD1 Beta-prop_SCAP
Other DBs
NCBI-GeneID: 103329811
NCBI-ProteinID: XP_008230553
LinkDB
Position
LG4:complement(20743202..20746583)
AA seq 338 aa
MKTPMTQLDDETVRSMAIGAVFSDFGGKINSLDFHRKDDLLVTASEDDSVRLYDIATAKL
LKTTFHKKHGADRICFTHHPSSVICSSKYNLDATGESLRYLSMYDNRCLRYFKGHKERIV
SLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILHLRGRPTVAYDQQGLVFAVAMEGGAI
KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSSDGKSMLLTTTNNNIYILDAYGGEKRCGY
SLEPSPNVIIEATFTPDGQYVVSGSGDGNLHAWSINKRNEVACWNSHIGVPSCLKWAPRR
AMFAAASSVLTFWIPNDSNAEPTRMDTEAGVEAEHPSQ
NT seq 1017 nt   +upstreamnt  +downstreamnt
atgaagacgccgatgacacagctcgacgacgaaacggtgcgcagcatggccattggagcc
gttttctcagactttggtgggaagataaattcactggattttcaccgcaaggatgattta
ctggttacggctagcgaggatgattctgtgcgactctatgacattgcaactgctaagttg
ctaaagaccacattccataagaaacatggagcagatcgtatatgctttacccatcaccca
agttctgttatatgctcttcaaaatacaatctggatgccactggagaatcactgcggtat
ctgtcaatgtatgataatcgatgccttcgctacttcaaaggacataaagagagaattgtt
tccctctgtatgtctccagtcaacgatagcttcatgtctggttcgttggaccactctgtc
agaatatgggatctccgtgtaaatgcctgccagggaattttgcatctacgtggtagacct
acagttgcctatgaccagcaaggtcttgtttttgctgtggcaatggaagggggtgcgatt
aaattgtttgattcacgttcctacgacaagggtccatttgatacctttttagttggtgga
gatactgctgaagtttgtgatatcaagtttagcagtgatggcaaatcaatgctcttgaca
accacaaacaacaacatctatattctggacgcatatggaggagagaagcgctgtgggtac
agtttggaaccatctcctaacgtaataatagaggcaacttttaccccagatggccagtat
gtcgtgtcaggctctggagatggaaacttgcatgcctggagcatcaacaagcggaacgag
gtggcatgctggaacagtcacattggagttccatcttgcttgaagtgggctccccgcagg
gccatgtttgctgctgcatcatctgttcttaccttttggatacctaacgactcaaacgcc
gagccgactcgcatggacaccgaagccggtgttgaagccgagcatccgtctcagtaa

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