Prunus mume (Japanese apricot): 103329813
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Entry
103329813 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pmum01009
]
103329813
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103329813
03041 Spliceosome [BR:
pmum03041
]
103329813
Protein phosphatases and associated proteins [BR:
pmum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
103329813
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
103329813
Spliceosome [BR:
pmum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
103329813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
CCDC158
zf_CCCH_4
RRM_Nup35
DUF4407
RNA_bind
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
103329813
NCBI-ProteinID:
XP_008230555
LinkDB
All DBs
Position
LG4:complement(20774632..20780403)
Genome browser
AA seq
913 aa
AA seq
DB search
MELKVSSPKPGGLSPSDCISDPEEKEVSDDDDDDRNHKHRRRETRSQSLERDTLDQVIAR
PYRKRNKPFANGNSFRDNDSQASTTWRNYNSTSQDFTVKFDKRRPGLASLPRAPFDLNQR
IRANQGFLGDPGLGRGRGRDSGSNLFAGRGLPSVSSAQNASWNAFGLIPGIPNGAMDTLH
SIGLQGTLRPPIHSSMNMVIPRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQSLSQF
NLPVSSAHLLGKPTGPGSLPSVSASSAALMNSKGLHGKTSKSAVNDDGLGLNGPYSGPGY
LGGADLYDPDQPLWNNNGPETSNALLGLQSPRNDETESLSNDDPSDRNHARLDSADNECP
IRSVGTVANSQSTSVSVWGRIGSSKSKLDVKEKIDPTNNSSDCIESETKEGKEALVSIQN
PPRQGKRIMAEDGPKAMDSSPKTHFDPTRNIRKPSQKALRTLFVNGIPQKSNKREALLSH
FQKFGEVIDIYIPLNSERAFVQFSRREEAEAALKAPDAVMGNRFIKLWWANRDSIPDDGT
GTASNFPGSIPPHPIVTSISKDNLQSAAPKSSIVHTSDTFLPSADNSKPVISNGPKAPPL
QKKLENLEQLKEELRKKQEMLDQKRNDFRRKLDKLEKQATGPKGEADIEQAAKRPKVGIT
ADVGKVANLKSSNPTPMEELHAEMTDKNKCVENVVSCSPKTSTTMVLQQSTSLKQLSIRP
LGSIGTPSPVNRYKLDNRPTAFRILPPLPAGFANVAIMKEHFSPYGDLSNAELEDLESRD
CGSESEASKDCSACITFTTRRSAERAFLNGKCWEGHDLKFMWLTSSISSNDRSGRENSPS
TTTTPKGPIIADVEPADEVADSGSQEAAAASGNGEPEHSEGQGGVEHVEPGEYSQSSSRS
TSGEKESSKGEAM
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggagttaaaagtttcatctccaaaaccggggggcctttctccttctgattgtattagt
gatcctgaggaaaaggaagtcagtgatgatgatgatgatgatcgaaaccacaaacatcgt
agacgagagactcgttctcagtctttggagagagatactcttgaccaagttatagcaagg
ccatatagaaagcgaaataaaccttttgcaaatgggaactctttcagggataatgactct
caagcaagtacaacatggagaaattacaattccacttctcaagactttactgtaaaattt
gataaaagacgcccgggattagcatcactgcctcgagcacctttcgatttaaatcaaaga
atccgtgcaaaccaaggatttcttggagaccctggtcttggtaggggaagaggaagagac
tctggatcaaatctttttgctggacgcggattaccaagtgtttccagtgcacagaatgca
tcctggaatgcatttggattgattccaggaatacctaatggtgccatggatacactacat
tccattggcttgcaaggaacactcagaccaccaatccattcttcgatgaatatggtgatt
cctcgtcaaagatgtagagactttgaggagcgtggattttgtctaagaggggatatgtgc
ccgatggagcatggtgtgaatcggattgttgttgaagatgtccagagtctttctcagttc
aatctccctgtatcaagtgcacacctactgggaaaacccactggcccggggtctctacca
tcagtcagtgcatcttcagctgcattgatgaatagcaaaggcttacatggaaaaacaagc
aagtctgctgtcaatgatgatggtttgggcttgaacggtccatattctggtcctggttat
ctgggtggagctgatttgtatgaccctgatcaacccctgtggaataataatggtcccgaa
acctcaaatgcacttctaggcctgcaatcacctaggaatgatgaaactgaatccttgtca
aatgatgatccatctgatcgtaatcatgccaggttagatagtgctgataatgaatgccca
attagaagcgttgggacagttgccaattcacagagtacaagtgtgtccgtgtggggtagg
attggcagttcaaaaagtaaattagatgtgaaggagaaaattgatcctacaaataattct
tcagattgtattgagagtgaaactaaggaaggtaaggaggcattagtcagcattcaaaat
ccaccacgtcaagggaagcgtatcatggcagaagatggcccaaaagccatggattcatca
cccaagacacattttgatcctacacgtaacattcggaaaccatctcaaaaagcattgcgt
actctatttgtcaatggcattccccagaagagcaacaaaagggaggctcttctttctcat
ttccaaaagtttggagaggtcattgacatttatattccattgaatagtgaacgagctttt
gtccagttttcaaggagggaagaggctgaagctgctttaaaggcgcctgatgctgtaatg
ggtaaccgctttatcaagttgtggtgggctaatcgtgatagcattcctgatgatggcaca
ggcactgcaagtaattttcctggttcaattcctccgcatccaatagttactagtataagc
aaagataatcttcaatctgctgctccaaagagtagtattgtccatacatctgatactttt
ctaccttccgctgataactccaagcctgtcatctcaaatggtcccaaggccccacctctg
cagaaaaagctagagaatttagagcagttaaaggaggaacttcgcaagaaacaggaaatg
ctggaccagaaacgaaatgactttcgtcgcaaattggacaaacttgagaaacaagctact
ggacccaagggtgaggcagacatagagcaagctgctaagagacccaaagtgggaataaca
gctgatgttggtaaagttgctaatctaaagtcctcaaatccgactcctatggaagaactg
catgctgagatgactgataaaaacaaatgtgtagagaatgttgtctcctgtagtccaaaa
accagtacaactatggtgctgcagcaatccactagcttgaagcagctgagtattcgtcca
ttgggatcaatagggactccttctccagtgaacagatacaaattagacaatcgtcccact
gcatttagaattcttcctcctttacccgctggattcgcaaatgttgctattatgaaggaa
cacttttcaccctatggagatctttctaatgcggagttggaagatctggaatcccgtgat
tgtggtagtgagtcggaggcatcgaaagattgctcagcttgtataactttcacgacacgc
cgttcagcggagagggcatttctcaatggtaaatgctgggaaggacacgatttaaaattt
atgtggctgacatctagcatttccagcaatgaccgtagtggcagagaaaattctccatcc
accaccaccacccccaaggggccaataatagctgatgttgagcctgcagatgaagtagcg
gacagtggttcccaggaagctgctgctgcatcaggaaatggagaacctgaacattccgaa
ggacaaggtggtgttgagcacgtggaaccgggagagtattcccagtctagttcgaggtca
acatctggtgagaaagagtcatctaaaggcgaagcaatgtaa
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