Prunus mume (Japanese apricot): 103329835
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Entry
103329835 CDS
T03196
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103329835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmum03041
]
103329835
03009 Ribosome biogenesis [BR:
pmum03009
]
103329835
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103329835
Spliceosome [BR:
pmum03041
]
Complex A
U1 snRNP components
U1 related factors
103329835
Complex B
103329835
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
Pre-60S particles
Helicases
103329835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103329835
NCBI-ProteinID:
XP_008230577
UniProt:
A0ABM0NVT4
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All DBs
Position
LG4:complement(20917368..20922950)
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AA seq
688 aa
AA seq
DB search
MAATATASSGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYDRPTGSAPPLKPS
SAQSISSSVHVQQSSQGRRPDEGDDRYGRGSNGGSKFDAGPRNQQSARSATVSSHNTTNG
TLSALGGSSLRGNVSSDTGIGLSAEAYSRRHEISVIGDNVPPPFTSFEATGFPSEILREV
QNAGFSSPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRSRNDPQMGPTV
LVLSPTRELATQIQDEAVKFGKSSRISCVCLYGGAPKGPQLRDIDRGADVVVATPGRLND
ILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMYTATWPKEVRKIA
ADLLVNPVQVNIGNVDELVANKSITQYIEVLAPMEKHRRLEQILRSQEPGSKIIIFCSTK
KMCDQLSRNLTRQFGAAAIHGDKSQSERDYVLNQFRSGRTPILVATDVAARGLDIKDIRV
VINYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDSKYASDLIKVLEGANQRVPPEIR
EMATRGGGMNRFRRWGSGSGGRDGGRGGRNDSSYGGRDGGRGGGWGFTPSSGRYDRGHNN
GYDRGRSPDKGSGHRGSNRSRSRSLERFDKALPTGGGSAGWSFHKAMMERERSSPPPPRS
LPYGGGVDEAEEGMIPQEEEGGYHIANA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggctgccactgcaactgcctctagtggtcctcgatatgctccggaggaccccactctt
cccaaaccatggagaggattggttgatggtaaaactgggtatctttacttttggaacccc
gagactaatgttacccaatatgacaggcctacgggctcagctcctccattaaagccgtct
tcggcacaatctataagttcttcagttcatgttcaacaatcttcacaaggacgtcgtcct
gatgagggagatgataggtatggcagaggcagcaatggtgggtcaaaatttgacgctgga
ccaagaaatcagcagagtgcaagaagtgcaacagtttcttctcataataccacgaatggg
acacttagtgcacttggaggatcttctctgagaggaaacgtatcatcagacactggaatt
ggtttgtctgctgaggcttatagtcgtcgacatgaaatatctgttattggtgataatgtg
cctccacccttcacttcatttgaagctactggcttcccatccgagattcttagagaggta
caaaatgcaggtttttcttccccaactccaattcaggcacagtcttggccggttgctctt
caaagtagagatatagtagccattgctaaaacaggttcagggaagaccttggggtattta
cttccaggattcatccatctcaagcgcagccgtaatgaccctcagatgggtcccactgtg
ttggtgttatcaccaacaagggagctggcaacgcagattcaagatgaggcagtgaagttc
gggaagtcctcgaggatatcttgtgtgtgtttgtatggaggagctccaaaaggtccacag
ttgagagatattgaccgaggagccgatgttgtggttgccactcctggccgcttgaatgat
attcttgaaatgaagagaatcagcctccatcaagtttcgtacttagtgttggatgaggct
gaccgtatgctggacatgggttttgaacctcaaataaggaagattgtgaatgaggtacct
gctcgacgccagaccctaatgtatacagcaacttggccgaaggaggttcgcaagattgca
gcagatctgctggtcaatcctgttcaggttaacattggcaatgttgatgaactggttgcg
aataaatccatcacacagtatattgaagtactcgccccaatggagaaacacaggcgactg
gagcaaatattgcgatctcaagagccaggatccaaaataataatcttttgttcaaccaag
aagatgtgcgatcaactttctcgcaacctaacccgccagtttggagctgctgcaattcat
ggtgacaaatctcagagtgagagggactacgtgttgaatcaatttcgctctggaaggact
ccaattcttgtagcaactgatgttgcagctcgaggattggacatcaaggacataagggtg
gttatcaactacgacttccccactggagtggaggattatgttcacagaattgggagaact
ggaagagctggtgccactgggctggcttacacattctttggtgatcaggattcaaagtat
gcatcagatctcatcaaagttttggaaggggcaaatcagcgtgtccccccagaaattcgt
gagatggctacccgtggtggtgggatgaacaggttcagacgttggggttctggatctggt
ggccgtgatgggggtcgtggtggacgaaatgattcaagttatggtggaagggatggtggg
aggggaggcggatggggatttactccctcttctggcaggtatgaccgtggtcacaacaat
gggtatgatagaggccgaagccctgacaaggggtcaggacatagaggctctaaccgcagc
cgtagtcgtagtcttgagaggttcgacaaggctctgcctacaggtggaggctctgcaggg
tggagttttcacaaagcaatgatggaacgtgaacggtcatcgccgccacctccacgctca
ctcccgtatggtggtggggtggatgaagctgaggaaggtatgatacctcaagaagaggag
ggtgggtatcatattgcaaatgcataa
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