KEGG   Prunus mume (Japanese apricot): 103329892
Entry
103329892         CDS       T03196                                 
Name
(RefSeq) DNA repair protein UVH3 isoform X1
  KO
K10846  DNA excision repair protein ERCC-5
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    103329892
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pmum03400]
    103329892
DNA repair and recombination proteins [BR:pmum03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     103329892
SSDB
Motif
Pfam: XPG_N XPG_I UBM XPG_I_2
Other DBs
NCBI-GeneID: 103329892
NCBI-ProteinID: XP_008230637
LinkDB
Position
LG4:21220058..21228638
AA seq 1681 aa
MGVHGLWELLAPVGRRVSVETLAGRRLAIDASIWMVQFMKAMRDEKGEMVRNAHVLGFFR
RICKLLYLRTKPVFVFDGGTPALKRRTVIARRRQRENAQSKLRKTAEKLLLNHLKATKLK
VLAEDIKNQRQNQKNDAKGKQSLPDQTGRSGDDNLEKNDMALLSSNQEKLDEMLAASIQA
EEEGGLAKNASKFTAAVPCEEDGEEDDEEMILPEMHGEVDPAVLANLPPSMQLGLLLQSN
KQDNDAKGKKVMSDQTEMVGINLENCEAVSRSCNQEKLDEMVAASIAAEEDAGATNNAST
STASIFVEEDVDEDGDDDDEEMILPEMHGKVDPAVLAALPPSMQLDLLVQIRERLMAENR
QKYQKVKKDPGKFSELQIQSYLKTVAFRREIDQVQKAAAGRGVSGVHSSRIASEAHREFI
FSSSFTGDKQVLASARADKNGDKQQAPKEHPSNSRNSVPSTNNVTGATPDESTSVFDDNI
ETYLDERGHLRVSRVRAMGIRMTRDLQRNLDLMKEIEQEKTNTNKIINTRDMLNERDIDI
SKSSFSNRKVIETSCGDNGDSIDTGVLRSHPDQKKVLESSIGDNSLNDRNNQCTLKLETP
IEISIEDGGESKSFDGDDDLFASLVAGNAVTTNANDILRKQSSGSDSDCDWEEGTVEVKS
KVPRVEGNMSDDSEVEWEEGVCGITENTSSFPRECGETVSKGYFEEEANFQEAIRRSLED
IGDVKCAYASSAEEKLQCFGGEAYKGADFIDRETKIVEAVLVGKIGKRQNESSCDIVDGV
KKMKSVTDLDSPPAQTMQNVSERENFCGGMQCAESVTPSGTKEVHMITEQVLGTFNEDDS
LSTLPNTLEKNKAHSFDALSCDATDWVDDQKNEIEAEPSCHIVEMANPAALTGSLTGKLT
NDCDVDKTWVKEKSHDNFFQESEHSWDKSSLNSDANARVEATEANLEEEMLILGQECMNL
GDEQRRLERNVESVSSEMFTECQELLQMFGIPYIIAPMEAEAQCAYMELANLVDGVVTDD
SDVFLFGAQSVYKNIFDDRKYVETYFMKDVEKELGLSREKLIRMALLLGSDYTEGVSGIG
IVNAIEVVNAFPEEDGLHKFRDWIESPDPTILGKFDGETGSGAKKRGSKFGDKDINSQSN
KEEVSAFDQNNCHGQEHKQSADLIEEIKQTFMDKHRKVSKNWHIPPSFPSEAVSVAYTCP
QVDKSTEPFTWGKPDHFVLRKLCWEKFGWGTQKADELLIPVLKEYDKRETQLRLEAFYTF
NERFARIRSKRIKKAVKGIAGNQSSELIEDAAQEVSRSRKKGSISTDEAGDDKSEKLSEG
TEKGVFRDQRNSKGKSTIKQSRKRRTTEVPVPSDRPKPAEMARTTNRRLRANGKGRGRGR
KVLGRGKGKENPSAEASETSPSKTDDDDDDDGMDLHMETVEGSGEVRRSGRLRKPVNYTV
NDLENDDVDDPLDHCDTKCSNEESGEQLSWDEGKCEEGPSRFSEKKQQNAGNLSPNAGLC
NDYLETGGGFCLVEDETGELAGGGFCPVEDETGELGLSQHHDPSFEAEVSEDYHKMGGRL
CRDGQVGNDRDEIGVQATAAASEDSDLPNFSGFVNKVDFGNASVQSSVGTKRPLQGFEGC
ERTGAYDTEQIINDEIASKNDDHSKLSVSLQENTVDNSGKTSAGVGALSAMPFLRKKRRQ
T
NT seq 5046 nt   +upstreamnt  +downstreamnt
atgggagtccacggtctatgggaactactggcccccgtcggccgccgcgtgtccgtcgaa
accctagccggaagaagactcgccatcgatgcgagcatatggatggtgcagtttatgaag
gcaatgcgggacgagaagggagagatggttcgcaacgcgcatgtactcggcttctttcgt
cgaatttgcaagctactgtacctgcggaccaagcccgtctttgtattcgatggcggaacc
ccagccctcaagcgccgcacagtgatcgctcgaagaagacagcgggagaacgcccagtcc
aagcttcgtaagactgccgagaaattgcttctcaatcatcttaaggccacgaagctgaaa
gtcttggctgaggatattaagaaccagaggcagaatcaaaagaatgatgccaagggtaag
caaagtctaccagatcaaactggtaggtcgggagatgataatttagaaaaaaatgatatg
gccttgctgagtagcaaccaggaaaagctggatgaaatgttggcagcatctattcaggct
gaggaagaggggggtttagcaaagaatgcatcaaaatttactgccgctgttccttgtgag
gaggatggcgaagaagatgatgaagagatgatactaccagagatgcacggtgaagttgat
ccagctgtattagctaatttgcctccatccatgcaacttggacttcttttgcagtcaaat
aagcaggataatgatgctaagggtaagaaggttatgtcagatcaaactgagatggtggga
atcaatttagaaaactgcgaagcggtctcaaggagttgcaatcaagaaaagctagatgaa
atggttgcagcatctattgcggcagaggaggatgctggtgcaactaataacgcgtcaaca
tcaactgcttctatttttgttgaggaggatgttgatgaagatggcgatgatgatgatgaa
gagatgatactgccagaaatgcatggtaaagttgatccagctgtattagctgcattgccc
ccatcaatgcagctcgatcttcttgttcaaattagagagaggttgatggcagaaaaccga
caaaagtatcaaaaagtcaaaaaggatcctggaaagttctctgagctacaaatacaatct
tatcttaaaactgttgctttccgtcgcgagatagatcaagtacagaaagctgctgctggg
aggggggttagtggtgtccatagctcacggatagcctctgaggctcacagagagtttatc
ttttcctcatcatttactggtgataaacaagtacttgcatctgcaagagctgataagaat
ggagataagcaacaagcaccaaaagagcatccttcaaattccaggaacagtgttccgtct
accaataatgtgactggagcaacccctgatgaatccacaagtgtttttgatgacaacatc
gagacgtatttggatgagaggggccatcttcgagtcagtagagtgagagctatgggaatc
cgtatgacccgtgatttacaaaggaacttggatttgatgaaggagattgaacaggagaaa
acaaatacaaacaagataatcaacactagggatatgctcaatgaaagagacattgacatt
tcaaaaagttcctttagtaatagaaaagtcatagaaacatcatgcggtgataatggtgat
tccattgacactggtgtgttgagaagtcatcctgatcaaaagaaggttttggaatcctca
attggtgataatagcttgaatgacagaaataatcagtgtacattaaaacttgaaactcct
atagaaatatctattgaagacggtggtgagagcaagtcttttgatggtgatgatgatctt
ttcgcttctttagtggcaggaaatgctgtaactactaatgctaatgatatattaagaaaa
caatcttctggttctgattcagactgtgactgggaggaaggaactgttgaagtgaaaagt
aaggtgcctcgtgtggaaggtaacatgagcgatgacagtgaagtggaatgggaggaagga
gtttgtggtattacagaaaatacctcatcttttcctcgtgagtgtggggaaacagtttcc
aaaggttattttgaagaagaggctaattttcaggaggcaataaggagaagtcttgaggat
attggggatgtgaagtgtgcttatgcatcatctgcagaggaaaagttgcaatgttttgga
ggagaggcttataaaggtgctgattttattgatagagaaactaagatagttgaggcagtt
ttggtcgggaaaattggtaagcgacaaaatgaatcatcttgcgatattgttgatggagtc
aagaagatgaaaagcgttacagacttggattctcctccagcacaaacaatgcagaatgta
agtgaaagggaaaatttctgtggaggaatgcaatgtgctgaatctgttactccgtcagga
acaaaggaggtccatatgattactgaacaagtcttgggtactttcaatgaggatgacagt
ttatctaccttgcccaataccttagaaaaaaataaagctcattcttttgatgccttgtct
tgtgatgctaccgattgggttgatgatcagaagaatgaaattgaagctgagccatcatgt
catatagttgagatggctaacccagctgccttaacggggtcattgacaggaaaactaaca
aatgattgtgatgttgataaaacatgggttaaggaaaagagtcatgacaatttttttcag
gaaagtgagcacagctgggacaaatcttcactcaacagtgatgcgaatgcacgtgttgaa
gccacagaggctaatttggaggaggaaatgctaattctcggccaagaatgtatgaatctg
ggagatgagcagagaaggcttgaacgtaatgtagaatcagtcagcagtgagatgttcact
gaatgtcaggagctactgcaaatgttcggtataccgtacattattgcgccgatggaagcc
gaagcccaatgtgcatatatggaacttgcaaaccttgttgatggtgttgtgactgatgac
tctgatgtgttcttgtttggggcgcaaagtgtgtacaaaaatatatttgacgatcgtaaa
tatgttgagacatatttcatgaaggacgttgagaaggagcttggcctaagcagagagaag
ttaattcgtatggcacttcttcttggaagtgattatactgaaggagttagtgggatcggc
attgtcaatgctattgaagttgtgaatgcatttcctgaggaagatggcctccataaattc
cgggattggattgaatcaccagatcctaccattctagggaagtttgatggtgaaacggga
tcaggtgcaaagaaaagggggtctaagtttggggataaggatatcaattcacagagcaac
aaggaagaagtctctgcatttgaccaaaataattgccacggtcaagagcacaagcagtca
gctgatcttattgaagaaataaagcaaactttcatggataagcataggaaagtgagcaaa
aattggcatattcccccctcttttccaagtgaagcagttagtgttgcttatacttgtcca
caggtggacaaatcaactgagcccttcacatggggaaagccagatcattttgttcttcgc
aaattatgttgggaaaagtttggttggggtacccagaaggcagatgaattgctaatacct
gttctgaaggagtatgacaaacgcgagactcaactgcggctggaagctttttacacgttt
aatgaaagatttgcaagaattcgtagtaagaggatcaagaaagctgttaaaggtatcgct
ggaaatcaatcttcagaattgatagaagatgctgctcaagaagtttctagaagtagaaag
aagggaagcataagtactgatgaagctggagatgacaaatcagagaaactgtcagaggga
acagagaaaggtgtttttagagatcagagaaattctaaaggaaagtcaactattaagcag
tcgaggaaaaggaggaccactgaagtgcctgttccatctgaccgaccaaagcctgctgaa
atggcacgaacaactaatagaagattgcgtgcaaatggaaaaggcagaggaagaggtagg
aaggtattgggaagaggaaagggaaaagaaaatcccagtgctgaagcatctgaaaccagc
cctagtaagactgatgatgatgatgatgatgatgggatggaccttcatatggagacagta
gaagggtcaggagaagtgcgcaggtcagggcgtttgcggaagcctgtaaattacacagtc
aatgacttagaaaatgatgatgttgatgatccactagatcactgtgatacaaaatgctcc
aatgaagagtcaggggaacaactatcctgggatgagggtaaatgcgaggaaggtccttct
cgtttcagtgagaagaaacagcagaatgcagggaacttgtctcctaatgcgggcctgtgt
aatgattatcttgaaacaggaggtgggttctgccttgttgaagatgaaactggtgaactt
gcaggaggtgggttctgccctgttgaagatgaaactggtgaacttggtctcagccaacac
catgatccttctttcgaggctgaggtttctgaagactaccataagatgggagggaggctt
tgcagagatggtcaggttggtaatgaccgagatgaaattggtgtacaagctacagctgct
gcctctgaagattccgaccttcccaatttctccggctttgtcaataaagttgattttggt
aatgcttcagttcaatccagcgttggcaccaaaagacctttacaaggatttgaaggttgt
gagaggacaggtgcatatgatactgaacaaattataaatgatgaaatagcttcaaagaat
gacgatcattcgaagttgagcgtgtcactgcaggaaaatactgtagataattctggaaag
acatccgcgggggtaggagctctaagtgcaatgcctttccttaggaaaaaaaggcggcag
acctga

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