Prunus mume (Japanese apricot): 103329973
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Entry
103329973 CDS
T03196
Name
(RefSeq) FACT complex subunit SSRP1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmum03000
]
103329973
03036 Chromosome and associated proteins [BR:
pmum03036
]
103329973
Transcription factors [BR:
pmum03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
103329973
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
103329973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
SSrecog
Rttp106-like_middle
HMG_box
HMG_box_2
HMG_WDHD1
YL1
CHDNT
CDC45
RNA_polI_A34
Motif
Other DBs
NCBI-GeneID:
103329973
NCBI-ProteinID:
XP_008230730
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All DBs
Position
LG4:complement(21692048..21697719)
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AA seq
644 aa
AA seq
DB search
MTDGHLFNNISLGGRGGTNPGQLKIYSGGISWKKQGGGKVVEVDKADIVGATWMKVPRTN
QLGVRIKDGLYYKFIGFRDQDVTSLTNYFQNTCGLTPEEKQLSVSGRNWGEVDLSGNMLT
FLVDTKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFV
GDENRPPAQVFRDKIMSMADVGAGGEDAVVTFESIAILTPRGRYSVELHLSFLRLQGQAN
DFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSELSMS
EELMNTKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDG
VLYPLEKSFFFLPKPPTLILHDQIDYVEFERHGAGGSNMHYFDLLIRLKSEQEHLFRNIQ
RNEYHNLFDFISSKGLKIMNLGEGQTADGVAPLLEEADDDAVDPHLVRVKNEAGGDESDE
EDEDFVIDKDDGGSPTDDSGEDDSDASESGAEKEKPAKKEPRKEPSTSKVSSSKKQKSKD
GGEDGAKKKKQKKKKDPNAPKRAMSGFMFFSQMERENVKKSNPGIAFTDVGRVLGDKWKK
MSVEEKEPYEAKARQDKLRYKDEISGYKNPQPMNIDSGNESDSG
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgacggacggccacctcttcaacaatatctctcttggaggccgtggaggcactaatccg
gggcagctaaaaatatattctggagggatttcatggaaaaaacagggaggtggtaaagta
gttgaggttgataaagctgacattgttggggcgacatggatgaaggtcccaaggactaac
caacttggtgttcggattaaagacggattatactacaagttcattggatttcgtgaccag
gatgtcactagtttgaccaactatttccaaaatacatgcggattaacaccagaggagaag
cagctttctgtaagcggacgtaattggggagaagtcgatttaagtgggaacatgctgact
ttcttggttgacactaagcaagcatttgaggtatctttggctgatgtttcacaaactcag
cttcagggaaaaaatgatgtcatcttagagttccatgtggatgacaccacaggagctaat
gagaaagattcattgatggaaataagttttcacataccgaactccaacactcagtttgtt
ggtgatgagaatcgtccccctgctcaagtttttcgtgacaaaatcatgtctatggcggat
gttggtgctgggggtgaagatgctgttgtcacatttgagagtattgcaatcctcacacca
aggggtcgctacagcgtggaacttcatctttcattcttgcgcttacaaggacaggctaat
gattttaaaattcagtacagcagtgttgttcgactgtttcttcttcctaagtctaaccag
ccacatacctttgttgttgttactcttgatccacctatccggaaggggcaaacattgtac
cctcatattgttttgcagtttgaaactgactatgtggttcaaagcgagctgtcaatgagc
gaagaacttatgaacaccaagtacaaggacaagttagaactatcttacaagggactaatt
catgaagtgttcaccacaatattgcgtggcttgtctggtgccaaagttacgaaaccggga
aaattccgtagttgtcaagatggttatgccgtgaaatcttcattgaaagctgaagatgga
gttctatatcctcttgaaaagagcttctttttcctacctaaacctcccacccttattctt
catgatcagattgactatgtggaatttgagaggcatggcgctggaggctcaaatatgcac
tattttgatcttctgatcagactcaaaagtgagcaagaacacctgtttcgaaacattcag
aggaatgaatatcataatctttttgacttcatcagttcaaagggtctcaagatcatgaac
ttaggagaaggccaaacagcagatggtgtggctcctcttcttgaagaggcagatgatgat
gctgttgacccacaccttgtccgtgtgaagaatgaagctggtggtgatgagagtgatgaa
gaggatgaagattttgttattgataaggatgatggaggttctcctactgatgattctggg
gaggatgattcagatgctagtgaaagtggagctgagaaagagaagcctgcaaaaaaggag
cctagaaaggaaccttcaacttccaaggtatcatcttccaagaaacaaaaatccaaagat
ggaggtgaagatggtgcaaagaagaaaaagcagaaaaagaaaaaggatccaaatgcacca
aaaagagcaatgtctggtttcatgtttttctcacaaatggagagagagaatgtaaagaaa
agtaaccccggaattgcatttaccgacgtggggagagtacttggagataagtggaaaaag
atgtcagtggaggagaaagaaccctatgaagcaaaggctcgtcaagataaattacgctac
aaggatgaaattagtggctacaagaacccccaacccatgaatatagattcagggaacgaa
tctgacagcgggtag
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