Prunus mume (Japanese apricot): 103330071
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Entry
103330071 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: cyclic nucleotide-gated ion channel 2
KO
K05391
cyclic nucleotide gated channel, plant
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
103330071
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pmum04040
]
103330071
Ion channels [BR:
pmum04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
103330071
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
DUF3382
TMEMspv1-c74-12
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
103330071
NCBI-ProteinID:
XP_008230836
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All DBs
Position
LG4:complement(22531005..22534463)
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AA seq
707 aa
AA seq
DB search
MSSHFSFFLSRWTRALRRQSSRADDTDNSSNLNNIEDIINAPISNSVECYACTQVGVPVF
HSTSCDGAHQLQWEASAGSSLVPIQSRSDLKKGLSRGRPAGPFGHVLDPRSKRVQRWNRA
FLLARGMALAVDPLCVAGLSIAPAXMDGGRAAIVTVLRTCVDAVHLCHLWLQFRLAYVSR
ESLVVGCGKLVWDPHAIASHYVRSLKGFWFDAFVILPVPQAVFWLVLPKLIREEKIKVIM
TILLLIFLFQFLPKVYHSICLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYV
LAIQRVASCLRQHCELSANCNLSLSCSEEVCYQFLSPAGTMGNPCGGNTTASVVRKPPLC
LDVNGTFNYGIYQWALPVISSNSLAIKILYPIFWGLMTLSTFGNDLEPTSHWLEVIFSIC
IVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSGLRRRVRHYERH
RWVTMGGEDEMDLIKDLPEGLRREIKRHLCLDLIKKVPLFHNLDDLILDNICDRVRPLVF
SKDEKIIREGDPVPKMLFIVRGHIKRSQGLSKGMVGTNVLEPGGFLGDELLSWCLRRPFI
DRLPASSATFVCLESTEAFGLNADDLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVN
IQFAWRRYRLRTNRGPVIPVVQNGGTEQRLLQYAAMFMSLKPHDHLE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcccacttctccttcttcctctccaggtggaccagagctctccggcgccagagc
tctcgagccgacgacaccgacaacagcagcaacctcaacaacatcgaagacatcatcaac
gccccaatctccaactccgtcgagtgctacgcctgcacgcaggttggggtcccagtcttc
cactccaccagctgcgacggggcccaccagctccaatgggaggcctccgccggctcttcc
ctagtccccatccaatcccgttccgacctcaaaaagggcctctcccgcggccgccccgct
ggccccttcggccatgtcctcgacccccgcagcaagcgcgtgcagaggtggaaccgcgcc
ttcctcctcgcgcgtgggatggcgctggcagtcgacccgctctgcgtcgccgggctttcc
atcgcccccgctnggatggacggcgggcgggcggccatcgtcacggtgctgcgcacgtgc
gtggacgccgtgcacctctgccacctgtggcttcagttccggctggcgtacgtgtcgcgg
gagtcgctcgttgtcgggtgcgggaagctcgtgtgggacccacatgccatcgcctcccac
tacgtgcggtccctcaaaggcttctggttcgacgccttcgttatcctccccgttccccag
gctgtattttggctggtacttccaaaattgatcagagaagagaagattaaggtgataatg
accattcttctcttaatttttttgttccaattcctcccaaaagtgtaccacagcatctgc
ttgatgagaagaatgcagaaggtcacaggctacatttttggcaccatttggtggggtttt
ggcctcaatctcattgcctacttcattgcctctcacgttgccggggggtgctggtatgtg
ctcgcgattcagcgcgtagcttcatgcctaaggcaacattgtgaattgagtgccaactgc
aatctctctttgtcttgctcagaggaagtttgctaccaatttttgtcaccggcaggcacg
atgggaaatccttgtggaggcaacacaacagcaagtgtggtgagaaagcccccattgtgc
ttggatgtcaatggaacattcaattatggaatctatcagtgggctctcccggtcatatct
agcaactcactggctattaagatcctttatcccatcttttggggtctaatgactctcagc
acctttggcaatgatcttgaacctacaagtcactggctagaagttattttcagcatatgc
attgtgctcagtggcttacttctcttcactttgttgattgggaacattcaggtatttctg
cacgcggttatggcaaagaagagaaaaatgcagctgagatgcagagacatggaatggtgg
atgaggcgaaggcagctgccatccggtttgagacgaagagtgcgccattatgaaaggcat
agatgggttacaatggggggagaagatgagatggacttgatcaaagacttgcctgaaggg
ctccgaagggaaattaagcgccacttatgcctagacctcataaaaaaggttcccctgttc
cacaatttggatgatcttattcttgacaacatttgtgatcgagtcaggccactggttttc
tctaaagatgaaaagataattagagaaggagaccctgttccgaagatgttatttattgtg
cgtggacacataaagcgtagccaaggcctaagcaaaggcatggtgggaaccaatgtgctt
gaaccaggagggtttctgggggatgagctgctctcctggtgccttcgccggccattcata
gaccgcttgccagcctcatctgccacgtttgtttgccttgaatcaacagaagcatttggc
ctcaatgcagatgatctgagatacatcacagatcatttcagatacaaatttgccaatgag
aggctcaaaagaacagcaagatactactcttccaattggagaacttgggctgctgtgaac
atacaattcgcttggcgccgctacaggctgaggactaacagaggtcctgtgatccctgtg
gtgcaaaatggaggcactgagcagaggctgttgcagtatgctgcaatgttcatgtcactt
aagccacatgaccaccttgaataa
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