Prunus mume (Japanese apricot): 103330237
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Entry
103330237 CDS
T03196
Name
(RefSeq) nipped-B-like protein B
KO
K06672
cohesin loading factor subunit SCC2
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmum03036
]
103330237
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
103330237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PHD
PDS5
PHD_2
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
103330237
NCBI-ProteinID:
XP_008231000
LinkDB
All DBs
Position
LG4:complement(22658349..22670806)
Genome browser
AA seq
1809 aa
AA seq
DB search
MSYSVTSSSSSGSAHWGISLSNTVHSEVAPCLPLPSLPVFCGASDQDLRLFDEPSRNSVW
LNHPDSALSSRIADLLRETDVSYLNLREDSSLVPYGYIEPLKLHDDVLQYNPEAFEYNSP
GPIKGQVPGSSTVPDKKPFKPSVPITRLAQRDYGATNNNQLNDIPPNDISTPSSRKPKAK
KKDSDVVMSSVGPDQTAIQGYAIIGRFCELVEDFCGRAEIFSDDREEAEWLSIPLSDLRV
LANEIMSLRAKRLLHLVPVDSFVRLLRILDHQIHRAEGLSISECEQSNSDVISSINCALE
SIHAALAVMAHNQMPKQLYKEEIIERILEFSRHQIMDVMCAYDPSYRALHRPSQNGSLEV
EEDEDPDAEIGSASKKRRSIKTIKVHKSSFNRVSAAVNNILQKMCTILGLLKDLLLIERL
SDGCILQLVKTSFTTFMVDNIQLLQLKAMGLISGIFYSYTQHRTYVIDELIQLLWKLPFS
KRALRAYHLPDEEQRQIQMITALLIQLVHYSANLPEPLRQESSGNSILELSLDADYPTKG
HEAATEACCHFWTRVLQRFASAKTQEASELKVMMENLVTDLLTTLNLPEYPASAPILEVL
CVLLLQNAGLKSKDIGARTMAIDLLGTIAARLKRDSALGSKDKFWILQELVSVDGDDQTD
PKNACSVCLDGRVEKNFFVCQGCQRMFHADCMGVREYEVPNRSWHCQICLCRKQLLVLQS
YCRSQCKDDGTKDRNRSGRNTEVAFSITKLEVVQQMLLNYLQDAASADDGHLFVRWFYLL
LWYKDDPKSQQKFMYYLSRLKSKEIVRDSGTVFSLLTRDSVKKITLALGQKNSFSRGFDK
ILHLLLASLMENSPVIRAKALRAVSIIVEADPQVLGDKRVQSAVEGRFCDSAISVREAAL
ELVGRHIASHPDVGLKYFEKVAERIKDTGVSVRKRSIKIIRDMCVSNANFSEFTKACIAI
ISRIGDDESSIQDIVCKTFYEFWFEEPTGSQTQFFGDGSSVPLEVAKKTEQIVEMLRRMP
SHQLLVTVIKRNLALDFFPQSAKAIGISPVSLASVRKRCELMCKCLLERILQVEEMNIQE
GERRTLPYVLALHAFCVVDPTLCAPASDPSQFVVTLQPYLKSQADSRVIAQLVESIIFII
DAVLPLVRKLPQSVVEELEQDLKNMLFMLASSLIFPPHYRCLCAVSKVAGKGAAIVENLI
QLFFKRLDAQAVDNKQQVGRSLFCLGLLIRYGNCLASNSDKTSDVVSSLSLFKKYLLVED
FVIKVRSLQALGFVLIARPEYMLEKDIGKILEATFSSSSDVRLKMQALQNMYEYLLDAES
QMGTDAASNNVIQYSVEGGNAVSVAAGAGDTNICGGIVQLYWDNMLARCLDLNEQVRQST
LKIVEVVLRQGLVHPITCVPYLIALETDPLESNSKLAHHLLMNMNEKYPAFFESRLGDGL
QMSFTFIQSITTSSEQENTKFPTKALGNAKGKCDSISLAQARVGVSRIYKLIRANRASRN
KFMSSIVRKFDNTGWTTSVVPFLMYCTEILALLPFTTPDEPLYLVFSINRVIQVRAGALE
AKLKALTLHLLQRGAPHGNGIIEEDPTPQPFQRGTTLVDLNGTIQQEPVFQPVTNYMPTM
QWNGVIQHEPADQSVSNQATPLGANMHVKGSGSSHGFSKDDEQKIQADCLAAIALQLLLK
LKRHLKIVYSLNDARCQAFSPADPLKPGDVLSRQNIPFDLSETHTTLPTTHQELVQRYQE
FKNALREDTVDYSTYTANIKRKRPAPRKGRKSVGGDDDGDDDDEDWTGGTRRLSNSGRRG
NYSRSRQRL
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgagttattcggtcacttccagttcgagctccggctcggctcactggggcatcagcctc
tcgaacacagtgcactcggaagtcgctccatgcttgcctttgccttcgcttccggtgttc
tgcggcgcatctgatcaggacctacggctgttcgacgagccgagtcgaaacagtgtgtgg
ttgaatcaccctgactcagctctttccagtaggattgctgatctgcttcgagaaactgac
gtctcttatttgaaccttcgagaagattctagcttagttccatatggttatatcgaacct
ttaaaacttcatgatgatgttcttcagtacaatccagaagcatttgagtacaatagtcca
ggtcctattaaggggcaagtgcctggcagtagtacagtacctgacaagaagcccttcaag
cccagtgtacctataaccagacttgcccaaagggactatggtgcaactaacaataatcag
ctcaatgatattcctcctaatgacatatctacaccatcttctagaaaaccaaaagccaag
aaaaaagatagtgatgtcgttatgtcatcagtcggaccagatcagactgcaattcaaggg
tacgccatcattggacgcttttgtgagttggtggaggatttctgcggtagagctgaaatt
ttcagtgatgatcgggaagaagctgagtggttatctattcctctttctgatcttagagtg
cttgcaaatgaaataatgtctcttcgagcaaagaggcttctacatttggtccctgtagat
tcttttgttagattgttaaggattttagatcatcagatacatcgagctgaaggcttgtct
ataagtgaatgtgagcagtcaaattcagatgtgatttcatcaataaattgtgcactagag
tccattcatgcagctttagcagtaatggctcataaccagatgccaaaacaactatataaa
gaagagatcattgaaagaattctggagttttctaggcatcagataatggatgttatgtgt
gcttatgatccatcatatcgtgctttgcataggccaagtcaaaatgggtcccttgaagtt
gaggaagatgaagaccctgatgctgaaattggttcagcaagcaagaaacgacgcagcatc
aagaccattaaagtgcataaatcatcatttaacagggtctctgctgctgtgaataatatt
cttcagaaaatgtgcaccattcttggtttactcaaggatttgttgttaatagaaaggttg
tcagatggttgcatcttacagctagtgaaaacaagctttacaacattcatggtggataat
atccagctcttgcaactgaaggcaatgggtttaatcagtgggatattctattcatacact
cagcatcggacttatgtgatagatgaattaattcagctgctttggaagttaccgttctca
aagcgagctttgagagcctatcacctacctgatgaagagcaaaggcagattcaaatgatc
actgctttgctgattcagttggttcactatagtgcaaaccttcctgaaccgttaaggcag
gaatcaagtggtaattccatcttagaactttctctcgatgccgattatccaactaaaggc
catgaggcagcaacagaggcgtgttgccacttttggactcgtgtacttcagcgttttgct
agtgcgaagactcaggaagcttcagagttgaaagtaatgatggagaatcttgttactgat
ctgctgacaacgttgaatttacctgaatatcccgcttcagctcctattctggaggttctt
tgtgtcttgttactccagaatgccgggctgaaatctaaagacataggtgcacgtaccatg
gcgattgaccttcttggcacaattgctgcgaggttgaagcgtgattctgcccttggcagt
aaggacaaattttggatactacaggagttggttagtgtggatggggatgatcagactgat
ccaaaaaatgcatgctcagtttgtttagatggtagggttgaaaaaaatttctttgtatgt
caaggttgtcagagaatgtttcatgctgattgcatgggggtaagagaatatgaagttcca
aatcgaagttggcactgtcagatatgcctctgcaggaagcaacttcttgttttacaatct
tactgtaggtcacaatgcaaagatgatgggacaaaagatcgtaatcgttcaggaagaaac
actgaagttgctttttcaattacaaaacttgaggttgtccagcagatgcttttgaattac
cttcaagatgccgcatcagctgatgatgggcatctctttgttcgctggttttatctcttg
ttgtggtacaaggatgatccaaaatcacagcagaagttcatgtactatctttctagactg
aaatcaaaagaaatagtgcgggattctgggactgttttttcattattgacaagggattca
gtcaagaagattactttagctttgggacaaaaaaactctttttccagagggtttgataag
attcttcatttgcttctggcaagtttaatggagaattcacctgtaattagggccaaggct
ttacgagcggtcagtataattgtagaagctgatccgcaggtgctaggagacaaacgcgtt
caatcggctgttgaaggaaggttttgtgattccgcaatttctgtcagagaagcagcactg
gaacttgtagggaggcatattgcttctcatcctgatgttggtttgaagtattttgagaag
gttgctgagagaatcaaagatactggagtaagtgttcgaaaacgatcaatcaaaatcata
cgagatatgtgcgtttcaaatgcaaacttttccgaatttacaaaagcttgcattgctatc
atctcccgtattggtgacgatgaatcaagtatacaggatattgtttgcaagacattttat
gagttctggtttgaggaacctactggttcacaaactcagttctttggagatggtagctct
gttccattggaggtggctaaaaaaactgaacagattgttgagatgttgaggaggatgcca
agtcatcaacttcttgtgaccgtcattaaacgcaacttagcccttgatttttttccccaa
tcagctaaagctattgggataagccccgtctcacttgcatctgtacgcaagcgctgtgag
ttaatgtgcaagtgcttactggaaaggatattacaggtagaggaaatgaatatccaggaa
ggagagaggcggacacttccatatgtgctagctttgcatgcattctgtgttgtggatcca
acactttgtgcaccagcttctgacccttcccagtttgtggttactcttcagccttatcta
aagagtcaggctgatagtcgagtgattgcacagttggtggagagcataatctttataatt
gatgctgttctgcctttggtacgaaagttaccacaaagtgttgttgaagaacttgaacaa
gacttaaagaacatgttgttcatgcttgcatcaagtttgatttttcctcctcattacagg
tgcctctgtgctgtgagtaaagtggcaggaaaaggtgctgctatagtggagaatcttatt
cagctgttcttcaaacgtttggatgctcaggcagtagataacaagcagcaagtggggcgg
tctcttttctgtcttggattgcttatccgttatggcaactgtttggcaagtaactctgac
aaaacaagtgatgttgtaagcagtctcagcttgtttaaaaaatatcttctagtggaggat
tttgtcataaaggttcggtcattacaggcattgggctttgttctaatagctcggcctgaa
tatatgttggaaaaagatattgggaaaatattggaggcaacattctcttctagctctgat
gttcgtcttaagatgcaagcgttgcaaaacatgtacgaatatctccttgatgccgaaagt
caaatgggaacagatgcagccagtaataatgtgattcaatactctgtggaaggtggcaat
gctgtatctgttgctgcaggtgctggagatactaatatctgtggtggtatagttcagttg
tattgggataatatgttagcgagatgtttggaccttaatgaacaagttcgccaatctaca
cttaagattgttgaagttgtgctgcgccaaggccttgtgcatcctattacttgtgttcca
taccttattgcactcgaaacagatcctctggagagcaattcaaaattagcacatcatttg
ctgatgaatatgaatgaaaagtaccctgcatttttcgaaagccgcctgggggatggcctt
caaatgtcgtttactttcatacagtccattactaccagttctgaacaggagaacacaaaa
tttccaacaaaggctttgggaaatgcaaagggaaaatgtgatagtatttctcttgctcaa
gcaagagtgggggtttctcgaatctataagcttattcgtgctaaccgggcttcgaggaac
aaatttatgtcttcgattgttcgcaagtttgataatactggctggacaacttcagtcgtc
ccgttcctaatgtactgcacagaaatacttgccttgctaccgttcacaacacctgacgag
ccgctttatttggtcttttctataaatagagtaatacaagttagggctggagcgcttgaa
gcaaaactgaaagctctaaccttgcatctgttacaaagaggtgcgcctcatgggaatggc
ataattgaagaggacccaactccccagccttttcaaagagggacgacattagtggatttg
aatgggacaattcaacaagaaccagtgtttcaaccagttacaaattatatgccaacaatg
cagtggaatggggtaatacaacacgagccagctgatcagtctgtctcaaatcaagctacc
cctttgggggcaaacatgcacgttaagggatccggcagttcccatggcttctcaaaagat
gatgaacagaagatccaggcagactgcctggcagctattgcgttgcagcttcttttgaaa
ctaaagagacacctaaagattgtgtatagcctgaatgatgcaaggtgccaggccttttct
ccagctgatccccttaaaccgggagatgttctctccaggcagaacattccttttgacctc
agtgaaacacataccaccttgcctacaacgcatcaagaattggtacaaagatatcaggaa
ttcaagaatgcgttgagggaagatactgttgattactctacttacacagccaacatcaag
agaaaacgtccggcccccagaaaaggacggaaatctgtaggtggagatgatgatggtgat
gatgatgatgaagattggacaggtgggactcggaggctgagtaatagtgggaggagaggt
aactacagtagaagtcgacagcggttatag
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integrated database retrieval system
