Prunus mume (Japanese apricot): 103330497
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Entry
103330497 CDS
T03196
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103330497
09123 Folding, sorting and degradation
03018 RNA degradation
103330497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103330497
03041 Spliceosome [BR:
pmum03041
]
103330497
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103330497
mRNA degradation factors
5'-3' decay
Lsm complex
103330497
Spliceosome [BR:
pmum03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
103330497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
103330497
NCBI-ProteinID:
XP_008231310
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All DBs
Position
LG5:572916..576640
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFSQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggaggaaagaaacagtcttggacctggccaagtttgtggacaaaggtgtccaa
gtcaagctcactggtggtagacaagtaacagggaccctaaaaggatatgaccagttgtta
aaccttgtcctagacgaagcagtagagtttctaagagattctgatgatccattgaagact
acggaccagaccaggcgccttggcctaatagtttgtaggggaactgctgtaatgcttgtg
tcgccaacagatggtacagatgagattgcgaacccttttagccagccagatggggcctaa
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