KEGG   Prunus mume (Japanese apricot): 103330497
Entry
103330497         CDS       T03196                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
pmum  Prunus mume (Japanese apricot)
Pathway
pmum03018  RNA degradation
pmum03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pmum00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103330497
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103330497
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pmum03019]
    103330497
   03041 Spliceosome [BR:pmum03041]
    103330497
Messenger RNA biogenesis [BR:pmum03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103330497
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103330497
Spliceosome [BR:pmum03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103330497
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 103330497
NCBI-ProteinID: XP_008231310
LinkDB
Position
LG5:572916..576640
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFSQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcagggaggaaagaaacagtcttggacctggccaagtttgtggacaaaggtgtccaa
gtcaagctcactggtggtagacaagtaacagggaccctaaaaggatatgaccagttgtta
aaccttgtcctagacgaagcagtagagtttctaagagattctgatgatccattgaagact
acggaccagaccaggcgccttggcctaatagtttgtaggggaactgctgtaatgcttgtg
tcgccaacagatggtacagatgagattgcgaacccttttagccagccagatggggcctaa

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