Prunus mume (Japanese apricot): 103331027
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Entry
103331027 CDS
T03196
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103331027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103331027
03012 Translation factors [BR:
pmum03012
]
103331027
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103331027
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103331027
Translation factors [BR:
pmum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103331027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
AAA_16
Myosin_head
PhoH
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
103331027
NCBI-ProteinID:
XP_008231860
LinkDB
All DBs
Position
LG5:6608374..6620751
Genome browser
AA seq
1153 aa
AA seq
DB search
MRSPRAAVGLLLKAVSNKNNACYPFYRTHTRNLALLLLHSSSSSSISNGGFLVSKRGFCG
YAAEQFSDDEYECDFEGQKASSSVANIDEWKWKMSLLLRSEKDQEIVSRDKRDRRDYEQI
SNLAKRMGLYCEIYGKVVVASKIPLPNYRPDLDDKRPQREVVIPLGLQRRVEGLLQEHLD
RVRLNSGKFTDNRGDSEHLDQLENAIPDENADSLLDGSVMEKVLQRRSLRMRNMQRAWQE
SPEGKKMLGFRKSLPAFKENERLLQAIAQNQVIVISGETGCGKTTQLPQYILESEIESGR
GAFCSIICTQPRRISAMAVADRVSGERGGRPLHQTVGYKVRLEGMKGKNTHLLFCTSGIL
LRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFS
NYFGGAPTIHIPGFTYPVKAHFLEDVLEITGYKLTSFNQIDDYGQDKMWKTQKQLVPRKR
KNQITALVEDALNKSSFESYSPRARDSLSCWTPDCIGFNLIEAVLCHICRKERPGAVLVF
MTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFGRPPPNVRKVVLATNM
AEASITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECFH
LYPRCVYHAFAEYQLPELLRTPLNSLCLQIKSLQVPSIGEFLSAALQPPEPLAVQNAIGF
LTSIGALDDNENLTSLGKYLSILPVDPKLGKMLIMGAVFHCFDPVLTIVSGLSVRDPFLL
PQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIH
SLRKQFNYILRDAGLVDADASINNKLSHNQSLVRAIICSGLFPGIASVVHRETSLSFKTM
DDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGISDSILILFGGSLNHGVQ
AGHLRMLEGYIDFFMDPSLVDCYLKLKEELNELIQKKLQDPSLDIHKEGKYLMLAVQELV
SGDQCEGRFVFGRDSKRPKESGDNSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKSN
EFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNSRDEENNSPPDVTDNMLK
LLGKRRRSKRQSG
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagtccgagagcagcagtgggtcttcttctcaaggcagtctccaacaagaataac
gcttgttatccattttaccgcacacacactcgtaacctcgccttactacttctgcactct
tcttcttcttcctcaatctccaatggcggattccttgtttccaagcgtgggttttgcggc
tacgctgccgagcagttctctgacgacgagtacgagtgcgatttcgagggccaaaaggca
tcatcttcggtggcgaacattgacgagtggaaatggaaaatgagcttgctgttgcgcagc
gaaaaggaccaagagattgtatccagagataagagggataggagagactatgagcagata
tcgaacctcgccaaaaggatgggactttattgtgaaatatatgggaaagtggtggttgcc
agcaagattcctcttccaaactacaggccagatttggatgataagcggccacaaagggag
gtggttatccctcttggtttgcaaaggagggtagagggtttgctgcaggaacaccttgat
cgagtccggttaaactctggaaagttcaccgacaatagaggtgactctgagcaccttgat
cagcttgaaaatgcaattcctgatgagaatgccgattctcttctagatgggtctgtcatg
gagaaggttcttcagaggaggagtttgcggatgcgtaatatgcaaagagcttggcaggaa
tcacctgaaggtaagaagatgctaggcttccgcaaatcactaccggctttcaaggagaat
gaaaggttgctgcaagcaattgcacaaaatcaggtaatagtgatttctggggagactgga
tgtggtaagaccactcaacttcctcaatatatactagagtcagaaatagaatctggccgt
ggagcattctgtagcatcatttgtacacagcctcgaagaatatctgctatggctgttgcc
gatagagtgtcaggagagaggggagggcgccctctccatcaaacggttggttataaagtt
cgattggagggaatgaagggaaaaaatacccatctgcttttctgtaccagtggtatttta
cttcgccgtctgttgagtgatcgcaacctgaatggtataacccatgttttcgttgatgag
attcatgagcgaggcatgaatgaagacttcttattgattgtgttgaaggatctgcttcca
cgccgtcgggatttaagattggttttaatgagtgccactctgaatgctgagctattttca
aattattttggaggagcaccaacaattcacattccgggctttacatatccagtgaaagca
cactttttagaagatgtacttgaaataactgggtataagttgacctctttcaaccaaatt
gatgattatggccaagacaaaatgtggaaaacacagaagcagttagtgcctcgaaaaagg
aaaaaccagattactgctctagttgaggatgctcttaataaatcaagctttgagagttat
agccccagggcgcgtgattcattatcatgttggacacctgattgcataggatttaattta
atcgaggcagttttatgccatatatgtcgaaaggaacgaccaggtgctgttctagtgttc
atgactgggtgggaggatatcagctgtttgagggatcaacttaaagcccatcccctttta
ggtgatcctaacagggttttgcttctaacttgccatgggtcaatggcgacatccgaacag
aaactcatatttgggagaccacctcctaatgttcgtaaagtagttcttgctacaaatatg
gcagaagcaagcattacaatcaatgatgtggtttttgtcgttgattgtggaaaagcaaaa
gagacctcatatgatgctttgaataatacaccttgtctactaccttcttggatatcgcaa
gcatctgctcggcaaagaaggggcagggctggtcgggtgcagccaggcgaatgcttccac
ctttaccccagatgtgtttatcatgcttttgcggaatatcaacttcctgaacttctcaga
actcctttaaactctctctgcttgcaaattaaaagtctgcaggttcctagtataggggaa
ttcttgtcagctgccttgcagccaccggaaccacttgctgttcaaaatgccattggcttt
cttacatcgattggggcattagatgataatgaaaatttgacaagtctcggaaaatatttg
tcaatacttccagtagatcccaaactagggaaaatgctgattatgggtgccgtgtttcat
tgctttgatcctgttcttacaatagtgtctggccttagcgtcagagatcctttccttttg
cctcaagacaaaaaggatttagcagggacagcaaaatctagattctctgcaaaagattac
agtgatcatatggctcttgttcgtgcatatgaaggatggaaagatgcagaacgagaagga
tcagcgtatgaatactgctggagaaatttcctttctgcccaaacacttcaggctattcat
tctcttcggaagcagtttaactacattttgagagatgctggcttggtggatgcagatgca
agcattaacaacaagctaagtcacaaccagtccttggttcgtgcaatcatatgttctgga
cttttccctggaatagcgtctgtagtgcaccgagagacatccttgtctttcaaaacgatg
gatgatggccaggttttactatatgctaattctgtgaatgcgcgttaccaaacaattccc
tacccctggttggtctttggtgaaaaagtaaaggtcaatactgttttcatacgtgattcc
actggcatatccgattcaatactgatcctttttggtggttccttgaaccatggggtccag
gctgggcatttgagaatgttggaaggttatattgacttcttcatggatcctagtttggtg
gactgctatttgaagcttaaggaagaactaaatgagcttattcaaaagaagcttcaagat
cctagccttgatattcacaaggaagggaagtaccttatgcttgctgttcaagagctagta
tccggagatcaatgtgaaggaagatttgtatttggccgtgacagcaagaggccaaaggag
tctggtgataacagcagattcacaaaagacggaaccaatcctaagagtttgctacaaact
ctgttgatgagagcaggacactcccctccaaaatataaaacaaagcaccttaagtcgaat
gaattcagagcattggtggagttcaagggcatgcaatttgttgggaaacccaagaaaaat
aagcagcttgcagaaagagatgctgctatagaagcactggcctggttgactcacacctca
gacaatagtcgtgatgaagagaacaactcccctcctgatgtcactgacaacatgctgaaa
cttcttgggaaacgcagaagatcaaaacgtcagtctggttga
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