Prunus mume (Japanese apricot): 103331730
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Entry
103331730 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC103331730
KO
K19026
spatacsin
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103331730
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
103331730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
103331730
NCBI-ProteinID:
XP_016651345
LinkDB
All DBs
Position
LG1:13836822..13860336
Genome browser
AA seq
3219 aa
AA seq
DB search
MDLSLGDKGPAILQLHKWGSSQAQLNLSEFREAFISPTRQLLLLLSYQCEALLIPLITGD
STATNNLESNSDESLQSPGSSAFCSQDLKAPGGSDSGRGDMPCTSGSTRDFDNDFTFQRE
ISKSKTYPFVGDVNSLAWGICEDTYNQHKDALFSEILFVSGKQGVMVHAFVESTGNTAGT
RNALEGRWVEWGPSVSLVDNMGIEEPSSLSCEATGNIDLNRANGNSVASKRWLQSFLTKV
ENVENNGSMLTRFPEKSLFPCSAKVVSFALFNSNLPILDFLSNTGSVPSMECWQERGHTS
ESDKSVNLHLTSSGQHFKSEILSNIFGVGMNTSYKCSRVFSSNSHYFIGFIFTQTDPASD
ESERSNKKNVLLVARLDHWGIQWVSSVKLDEGPKIRSVEEWTDFHFSDNLLVCLNASGLI
VFYAVMSGEYVAHLDILETLGLYPQLDFQKQETLSVGSEKHSLQVDGVDYKPVLQHGDYS
GRRIFKRLIAASHTSLIAAVDDYGVIYVISAGDYIPDKYYTNEKLLPHGQHLGLGMLAGW
EVGGSDIGHQRVYSNISASQKSIIPSMKNERSSFLDDCENNVLKQEGKGSSCLSGFSASS
KVTDQKCYDSEKKSHLMRKIFLPTYRFSEDDSICFSPFGITRLTKNHNLKDLRGSQIVHL
NLHAEPAVHDDNFLNSGCEMVHLQGKEESFIGGEAVGCTFQGCFYLVTEGGLSVVLPSVS
VSSNFLPVEVIGCRQLCIDSGIGYPVKNAREIKESKQPWSPWNVEILDRVLLYESAEEAD
RLCLENGWNLKISRMRRLQLALDYLKFDEIERSLEMLVGVNFAEEGVLRLLFAAVYLMIH
KVGNDNEISAASRLLALASCFSTKMIRKYWLLGHKTDAYEYARTQMLLLPPVVPQKVQDE
ISNSRRLHEMAHFLEIIRNLQSRLGSKYKRPGQEFVESGEASTLVDNDLSQDESQLSIIS
VDPKSLETSKQHEAYFPVSTSGFNYSEKLALTPVDPSVHLDSEDLSEVSALVPQGGFLEK
KVLPLENPKEMIARWKIDNLDLKAVVNDALLSGRLPLAVLQLHLHRSRDSFSGKEPHDTF
TEVRDIGRAIAYDLFLKGESGLAVATLQRLGEDVEASLKQLLFGTVRRSLRMQITEEMSG
YGYLGPYEWKILDRISLIERLYPSSSFWKTLHGRQKELMRFPASSSLPKRYYLPLLDSHA
FNSFSIECDDIDGVVFGSWTNVNENPSVPMVDEDNAYAGYWAAAAVWFSFYDQRIIDRIV
LDQSSFMGVHVLWESQLEYHVCHNDWEEVSRLLDLIPPHILVVGSLQVSLDGSQPASNFG
CSRGPDYGDYLCSLEELDAVCMDVPEIKVFRFSCNIMCSMWLRMLMEEKLARKLIFLKEY
WEGTLDILPLLARSGFITSKYEMPSEDDKIESLSEPQFPDDSGTFNVSTMQALHKLLIHH
CARYNLPYLLDLYLEQHELVLDNDSLSSLQEAAGDCEWARWLLLSRVKGCEYKASFSNAR
AIMSCNLVPGSNLSVPEMDEIIRTVDDIAEGGGELAALATLMYASVPIQSCLSSGSVKRN
SSTSAQCTLENLRPTLQRLXXXXXXXXXCFGQDATSNFLGPKAKNALSDYLNWRDNIFFS
SVRDTSLLQMLPCWFPKAVRRLIQLYAQGPLGWQSVSSLPVGEGLLHRDIDFVMNVDEDA
EISAISLEATIQKHIEEELYNSALEENSLGLEHHLHRGRALAAFNHLLTVRVQKLKSEAQ
THGQTNVQADVQTLLGPITESEKSLLSSVMPLAIINFEDSVLVASCALFLELCGFSASML
RIDIAALRRMSSFYKSSENIESLKQLSTKGSAFHAVSHGSDITESLARALADEHQHQDNS
STAKQKGASNLAAGKQPSRALMLVLQHLEKASLPPMVDGKTCGSWLLSGNGDGIELRSQQ
KAASHHWNLVTIFCQMHHLPLSTKYLSVLARDNDWVGFLSEAQIGGYPFDTVVQVASKEF
SDPRLRIHISTVLKGMQLRRKASSSSYSDTTEKKNEASFPDENFCVPVELFRILAECEKQ
KFPGEAILMKAKELSWSILAMIASCFSDVSPISCLTVWLEITAARETSSIKVNDIASRIA
NNVGAAVEATNSLPSGTKALTFHYNRQNSKRRRLLEPISGDPSAVPISDISNSPVGAQIF
DSQDPSSKGERNVELGESINVSSDSDEGPALLSKMVAVLCEQQLFLPLLRAFEMFLPSCS
LLPFIRALQAFSQMRLSEASAHLGSFSARFKEESTRLQSNVGREVQIGTSWISSTAIKAA
DAMLLTCPSPYEKRCLLQLLAATDFGDGGSAAAYYRRLFWKINLAEPLLRKDDILHLGSE
TLDDVSLATALEDNRHWEQARNWARQLEASGGPWKSAVHHVTETQAESMVAEWKEFLWDV
PEERIALWGHCQTLFIRYSFPALQAGLFFLKHAEALEKDLPARELHELLLLSLQWLSGMI
TLASPVYPLHLIREIETKVWLLAVESEAHVKSEGDFNLSSSSRDPALKNSSSIIDRTASI
ITKMDNHIGTFKNRTIEKHDPREHSLAYHKNQVLDASFPTTTGGSTKNKRRAKGYMPLRR
PPLDSAEKNTDLDNGSNSLNTINELQSQDENLKMELSFSRWEERVGPAELERAVLSLLEF
GQIAAAKQLQHKLSPVKVPSEFVLVDAALKLAAMSTPSKKVSILMLDEEVHSIIQSYNIL
TDQHQVDPIQVLESLATNFTEGCGRGLCKRIIAVAKAAAILGISFSEAFDKQPIELLQLL
SLKAQESFEEAHLLVRTHSMPAASIAQILSESFLKGLLAAHRGGYMDSQKEEGPAPLLWR
FSDFLKWAELCPSEQEIGHSLMRLVITGQEVPHACEVELLILSHHFYKLSSCLDGVDVLV
ALAATRVEAYVSEGDFSCLARLITGVGNFHALNFILGILIENGQLDLLLQKYSAAADANA
GTAEAVRGFRMAVLTSLKHFNPNDLDAFAMVYNHFDMKHETAALLESRAEQSSEQWFSHY
DKDQNEDLLDSMRYYIEAAEVHKSIDAGNKTRRACAQASLVSLQIRMPDFQWLYRSETNA
RRALVEQSRFQEALIVAEAYGLNQPSEWALVLWNQMLKPEVLEEFVAEFVAVLPLQPSML
ADLARFYRAEVAARGDQSQFSVWLTGGGLPAEWAKYLGRSFRCLLKRTRDLKLRLQLATV
ATGFGDVMDACMKSLDRVPDNVGPLVLRKGHGGAYLPLM
NT seq
9660 nt
NT seq
+upstream
nt +downstream
nt
atggatttgtctttgggtgataaaggacctgctatactgcagctgcacaaatggggctct
tctcaggcccagctaaacctgtcagaatttcgtgaagcttttatttctccgacaagacag
ctattattattgctttcgtatcagtgtgaagctttgttgattcctctaattacgggggac
tctacagctactaataatttggagagtaactctgatgaaagtcttcagagtccaggttca
tctgctttctgctcacaagacttgaaagcgcctggcgggtcagattcaggaaggggtgat
atgccatgtacctctggatcaacacgagattttgataatgatttcacttttcaaagagaa
atttcaaaatccaaaacttacccctttgttggtgatgttaactctctggcttggggtatc
tgtgaggatacttataatcagcacaaggatgctttgtttagtgaaattttgtttgtatcc
ggcaagcaaggtgtgatggtccatgcttttgttgaatccactggaaacacagcaggtacc
agaaacgcactggaaggcaggtgggtggagtgggggccctctgtctctttagttgataat
atggggattgaggaacctagcagcttgagttgtgaagccactggaaatattgatttaaac
agagccaatggaaacagtgttgcttctaagagatggttgcaatcttttctgacaaaagtt
gaaaatgttgaaaataatggtagcatgttgaccaggttcccggaaaagtcattgtttcct
tgctctgcaaaggttgtttcatttgctttatttaatagtaatttaccgattctggacttc
ctttctaacactggttccgtaccgagtatggagtgctggcaggaaagaggtcacacgtca
gagagtgataaatctgtaaacttgcatttgacttcatctggtcaacatttcaagtctgag
attttgtctaatatttttggtgttggaatgaacacttcatacaaatgctccagagtgttc
tcaagcaattcacattactttattggattcattttcacacagactgatcctgctagtgat
gaaagtgaaagaagcaacaaaaaaaatgtacttcttgttgctaggttagaccattgggga
attcagtgggtttcctccgtgaagcttgacgaaggtccaaaaattcgctcagtggaagaa
tggacagactttcacttttctgacaaccttcttgtttgtctaaatgcatctggcttaatt
gttttttatgcagtaatgtcaggtgagtatgttgcacatctagatattttagagactcta
ggactctaccctcagctggattttcagaagcaagaaacattgtcggtgggttctgagaaa
catagtttgcaagttgatggagttgattacaaaccagttttgcaacatggtgattattct
ggtaggagaatatttaagaggttaattgctgcttcacatacctccctaatagctgctgtt
gatgattatggtgtaatatatgtgatttctgctggtgactatataccggacaagtattat
acaaatgagaaattacttccacatggtcaacatctaggactaggcatgttggctggttgg
gaggtcggtggttctgatataggccaccaaagagtatattctaacatatctgcttcacag
aaatctattattccatccatgaagaatgagagatcttctttcctggatgattgtgaaaat
aatgtgcttaaacaagaaggaaagggcagctcatgcttgagtggtttttctgcttcatca
aaagtaactgatcagaagtgctatgactctgaaaagaaatcacacctgatgcgcaagatc
tttcttcccacttatagatttagtgaggatgattctatctgtttttctccatttggaatt
actcggcttactaagaaccacaatctgaaggacctgaggggttctcagatcgttcatctc
aatttgcatgctgagcctgcagttcacgatgacaactttttgaatagtgggtgtgaaatg
gttcatctccaaggcaaggaagaatcctttattggtggagaggcagtgggatgcacattc
cagggatgtttttatttggtgacagaaggtggtctttcagtggtgcttccttctgtatca
gtctcatcaaattttcttcctgttgaagttattggatgtcggcagttgtgtatcgattca
ggcattggatatccagtcaaaaatgcaagggaaataaaggaatctaagcagccttggtca
ccttggaatgttgaaattttggacagagtccttctgtacgaaagtgctgaagaggcagat
cgcttatgtttggaaaatgggtggaacctgaaaatatctcgtatgcgtcggcttcagtta
gcattggactacttgaaatttgatgagatagagcgatcattagaaatgcttgtgggtgtc
aatttcgccgaagaaggtgtgttaagattgctctttgctgctgtttatctgatgattcat
aaagttggcaatgataatgagatttctgctgcatcaaggcttcttgcattggcctcttgc
ttttcaaccaaaatgattcgtaagtattggttgctaggacataagacagatgcatatgaa
tatgctagaacccagatgcttttgcttccaccagttgtaccacaaaaggtacaagatgaa
atctcaaactcaagaaggcttcatgagatggcgcactttttggagataattcgaaatctg
cagtctcgacttggttcaaagtacaagaggccaggccaagaattcgtggaaagtggggaa
gcatcaacattagtggacaatgatttatcacaggatgagtctcagttatcaattatttcc
gtagaccccaaatctttggagacatcaaaacagcatgaagcttattttcctgtatctacg
tctggctttaattattctgagaagcttgctttgacacctgtagatccttcagtccatttg
gactcagaggacttaagtgaagtatctgctcttgtgccacaagggggcttcttggagaaa
aaagttcttcccttggaaaatcccaaagagatgatagcgcgttggaagatagataattta
gaccttaaggcagtagtcaatgatgctttactctctggtcgtctccccttagcagttctt
cagctacatcttcatcgttcaagggattcattttctggaaaagagcctcatgatactttc
actgaagtccgtgatattggaagagctattgcttatgacctatttttgaagggtgaatct
ggacttgctgtggccacgttgcaaaggcttggagaggatgtagaagctagcctcaagcag
ttattatttggtacagtgagaagatctcttcgaatgcaaatcactgaggagatgagtgga
tatggttacctggggccatatgagtggaagatattggatcggatatccctaattgagagg
ctttaccctagcagtagtttctggaaaacgcttcatggacggcagaaagaattaatgcga
tttccagcaagttcaagtttgcccaagagatattatttgcccctgctggattcacatgca
ttcaacagtttttccattgagtgtgatgacattgatggagttgtttttggttcatggaca
aatgtcaatgaaaatccctctgttcctatggtggatgaagataatgcttatgctggatac
tgggctgctgctgctgtatggtttagcttctatgaccaaagaatcattgaccgtatagtt
ttggatcagtcatcttttatgggtgtgcatgtactgtgggaatcacagcttgagtaccat
gtatgtcacaatgattgggaggaagtctctagactcctggaccttattcccccacatatt
ttagtagttggaagcctccaagtcagcttggatgggtcacagcctgcttcaaattttgga
tgcagtaggggacctgactacggcgattacttatgctctcttgaagaattggatgctgtc
tgcatggatgttccagaaatcaaagttttcaggttttcgtgtaatattatgtgctccatg
tggttaaggatgctgatggaagagaaacttgctagaaaactaattttcttaaaggaatat
tgggaaggcaccttagatatattacctctgcttgcccgttctggctttattactagcaag
tatgaaatgccttccgaagatgataagattgagagtttatcagagccacaatttccagat
gattctggaacatttaatgtcagtaccatgcaggccttacataaactactgatacatcat
tgtgcacggtataacttgccataccttctggacctttaccttgagcagcatgagttggta
ctggataatgattcactttcttcactacaggaagctgcaggagattgtgaatgggcaaga
tggttgctcctctctagggttaaggggtgtgagtacaaagcatcattttccaatgctcgt
gcgatcatgtcgtgtaatctagttcctggaagtaacctcagtgttccagagatggatgaa
ataattcgtactgttgatgacattgcagaaggagggggggaattggcagctttggcaaca
ctgatgtatgcctctgtcccaattcaaagttgcctgagtagtggtagtgtaaaaaggaat
agcagcacatcagcccagtgcacactagagaatctcaggcccactcttcagcgtttannc
nnnnnnnnnnnnnnnnnnnnnnnatgttttgggcaagatgcaacttccaattttttgggg
cctaaagcaaagaacgctctatcagattatttaaattggcgtgacaacatattcttctct
tctgtacgtgatacttcacttctacaaatgctgccgtgctggtttcctaaggccgtacgg
aggttgattcagctttatgcccagggtcctcttggatggcaatcagtatcaagtctgcca
gtgggagaaggtttgctacatagagatatagattttgtcatgaacgtcgatgaggatgct
gagatcagtgcaatctccttggaagcaaccatccaaaaacacattgaggaagaactctac
aattctgcacttgaggagaattcacttggcctggagcaccatttgcatcgtggacgtgca
ctagctgcttttaaccatttacttactgttagagttcaaaaattgaagtcagaggcacaa
acacacggacaaacaaatgttcaagctgatgttcaaacacttcttggacctataacagaa
agtgaaaagtctcttctttcttctgtcatgccacttgcaattattaattttgaggattct
gtgttggtggcttcatgtgctcttttcctggagctttgtggcttttctgcgagcatgcta
cgcatagacattgctgccttgagacggatgtcttctttctacaaatctagtgaaaatatt
gagagcttaaagcagctttcaaccaagggttctgcatttcatgcagttagccatggaagt
gatataacagaatctctagctcgagctctagcagatgaacatcagcaccaggataattca
agtactgctaagcaaaagggtgcttcaaatttagctgctggtaaacaaccttcacgagct
ctcatgcttgtcttacagcacttggaaaaggctagtcttcctccaatggtggatggaaag
acatgtggttcttggcttttgagtggcaatggtgatggaattgagttaagatctcaacag
aaagctgcaagccatcactggaatttagtcacaattttttgtcagatgcatcaccttccc
ttgagcacaaaatacctttctgtattggcaagagacaatgattgggttggatttttgtcg
gaagctcagattggaggatatccgtttgacacagtagtccaagtggcatcaaaggagttt
agtgatccacgtctcagaattcatatttcaacagttttgaaaggcatgcagttaagaaga
aaagctagctcttcttcgtattcagatactacagaaaaaaagaatgaagcttcctttccg
gatgaaaatttttgtgtcccagttgaactctttagaatattagcagaatgtgaaaagcag
aaatttcctggagaggccattttgatgaaagcaaaggagttgtcctggtcgattttggca
atgattgcatcgtgtttttcagatgtgtctccaatatcttgcctaacagtttggctggaa
atcactgcagcaagggaaacttcgtccattaaggtgaatgatattgcttccagaattgca
aataatgttggagcagctgtggaagctactaattccctgccatcagggactaaagccctt
acttttcattacaataggcagaattcaaaacgaaggcggcttctggagcccatctcagga
gatccgtcagctgtaccaatttctgatatttcaaattctcctgtgggtgcacaaatattt
gattcccaggaccctagttctaaaggggaaaggaatgtagaacttggtgaaagtatcaat
gtttcaagtgattctgatgaagggcctgctttgctgtcaaagatggttgcagtgctttgt
gagcaacagttgttcctgcctttgttgagggcatttgaaatgttccttccctcatgttct
cttttacctttcatacgtgctctccaggcattttcacaaatgcgcctatctgaagcatca
gctcatttgggttcgttttctgcccggtttaaagaagaatcaacccgcttacagtcaaat
gtaggaagagaagtgcagattggtacatcatggataagctccaccgccattaaagctgcg
gatgcaatgcttttgacgtgtccatctccttatgaaaaaagatgcttgctacaactcctt
gctgcaactgattttggtgatggaggatctgcagcagcatactaccgacggcttttttgg
aaaattaatttagctgagccattattacgcaaggatgacattttacaccttggaagcgag
accttagatgatgtttcacttgcaacagcattggaggataataggcattgggagcaagca
cgcaactgggccagacaattggaggccagtggtggaccttggaaatctgctgttcatcat
gtaactgaaactcaggctgagtcgatggtagctgagtggaaggagtttctttgggacgtt
ccagaagagagaattgctttatggggccattgccaaactttgttcatcagatattccttc
cctgctttacaggctgggttatttttcctcaaacatgcagaagctttggaaaaggatctt
ccagctagggagcttcatgagctattgctgctttctctacaatggttaagtgggatgata
accctggccagtccagtgtatccgcttcatcttattcgggaaattgagactaaagtgtgg
ctcttggcagtagaatcagaagcacatgttaagagtgaaggagacttcaatttaagcagt
tccagtcgtgaccctgctcttaaaaatagctccagtattattgaccgaactgcaagtata
ataacaaaaatggacaatcatattggtacatttaagaacagaactattgagaaacatgat
ccaagggaacacagcctggcatatcacaagaaccaagtattagatgctagctttccaacc
accacaggggggagtacaaagaacaaacggagggcaaaaggttacatgccattgagacgg
ccaccattggactccgcagaaaaaaacactgatcttgataatggttccaattctcttaat
actataaatgagttgcagtctcaggacgaaaacttaaaaatggaactgtctttttcacgg
tgggaagaaagggttggacctgcagagctggaaagggctgttctttctttattggaattt
ggacaaatagcagctgcaaaacaactccagcataagctatctccagtgaaagtaccatct
gaatttgtacttgtggatgctgcattgaagcttgcagctatgtcaactccaagtaagaaa
gtatccatattaatgcttgacgaagaggtgcattcaataattcagtcatacaatatactg
actgaccagcatcaagttgacccaattcaggttttggagagtctggcaacaaattttact
gaaggttgtgggcgtggactatgcaagaggataatagcagtcgccaaagcagcagccatc
ttaggtatttcattttcagaggcatttgataagcagccaattgaattgctacagctgctt
tcccttaaagcacaagaatcatttgaggaggcacatctccttgtgagaactcattcaatg
ccagcagccagtattgctcaaattctttcagaatcctttctgaagggcttattggctgct
catcggggaggatatatggattctcaaaaggaagaaggacctgctcccttattgtggaga
ttttcagacttcttgaagtgggcagagctttgcccttcagaacaagaaattggacattca
ttaatgcgtttggttattactggacaagaagtaccgcatgcctgcgaggttgagctacta
attttgtctcaccacttctacaaattatcatcttgcctggatggagttgatgttcttgta
gcccttgccgctactagggttgaggcttatgtgtctgagggtgacttttcatgtttggcc
cgtctcataactggagtaggaaacttccatgccctcaatttcattcttggaattcttatt
gaaaatggtcagcttgatcttcttcttcagaagtattcagctgctgcagatgcaaatgct
ggcactgctgaggctgtcagaggatttcgaatggcggttctcacatcactgaagcatttt
aatccaaatgaccttgatgcgtttgctatggtctacaatcatttcgacatgaaacatgaa
acggctgctcttttggagtcacgagcagagcagtcatcggagcagtggttcagccattat
gacaaggatcagaatgaagaccttttagactccatgcgctattacattgaagctgctgaa
gttcacaaatccattgatgctggaaacaaaacacgcagagcgtgcgctcaggcttccctt
gtgtctcttcaaattcgaatgcctgattttcagtggctgtaccgatctgaaaccaatgcc
aggcgggcccttgttgagcagtctcgtttccaagaggccctaattgttgctgaagcctat
ggtcttaaccagccgagtgagtgggctttggtactttggaaccagatgctcaaaccggaa
gtactggaagagtttgtagctgaatttgtggctgtgcttcctctccaaccttctatgctt
gctgatctagcaagattttatagggctgaggtggcggctagaggagaccagtctcaattc
tcagtttggctaacagggggagggttgccagctgaatgggctaagtatctggggaggtca
tttagatgcttgttgaaaaggactagagatttgaagctgcggttgcagctggctactgtg
gctactggctttggggatgtcatggatgcatgcatgaagtcattagatagggtccccgac
aatgttggaccacttgtactgaggaaaggccatggtggtgcttatctcccactgatgtga
DBGET
integrated database retrieval system
