Prunus mume (Japanese apricot): 103331794
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Entry
103331794 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
103331794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmum03400
]
103331794
DNA repair and recombination proteins [BR:
pmum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
103331794
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku_PK_bind
Ku
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
103331794
NCBI-ProteinID:
XP_016649745
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Position
LG5:complement(15030666..15035244)
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AA seq
697 aa
AA seq
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MARNKDAMVLLIDVSPSMHKALPEIEKVCSMLAEKKLIYSKYDEVAVVLFGTEETENELT
KEVGGYEHVVVLQNIKVVDGQLVETLQQLPRGTRDGDFLDAIIVGMDMLIKKYGETYKGK
KRLCLLTNAQFPIKYPLEGTKEDQVSTIAEHMNTHGMRMESIVVRGSLTGEANKSVMDEN
DNLLGIFSKKTCAKLVHVESPTSLLGALRTRKISPVTIFRGDLELSPKMKIKVXXXXKAS
EXKFPALKKYSDKAPPTDKFATHEVKVDFEYKSVEDPNKVVPPDQRIKGYRYGPQVIPIS
SAEWDAVKFKPEKSVKLLGFSDAKNIMRHYYMKDVNVFIPEPGNTRAILAVSALARAMQD
MNKVAILRCVWRQGQGNVVVGVLTPNVSDNDNIPDSFYFNVLPFAEDVREFQFPSFNNFP
ASWQPNEQQQEAADDFVRMFDLAPPGKEEALQPDLTPNPVLERFYRHLELRSRHPDAAVP
PLDETLRMITEPDKELLSQNRSVLDVFRSRFEVKENPKLKKSSRRFLRDKPSGSNEGHAD
ISDEPKSSGYTSAVKVEKVGDATPVQDFEAMINRRDSPQWVGKAIKDMKNKIHDLVEDSY
EGDNYPKALECLIALRKGCILEQEPKQFNDFLRTLCIFCQEKALSSFCEFLASKELTLIS
KTEAIDSEVTDDEARNFLVKSEPKLEXNPNFVSRCGV
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaacaaggacgccatggttttgttgatcgatgtcagtccatcaatgcacaaa
gctcttccagagatagaaaaagtttgctctatgctagcagagaagaagctgatttacagc
aaatatgatgaagtagcagttgttttgtttggaacagaagaaactgaaaatgaactaaca
aaggaagtgggtggatacgagcatgtggtggttttacaaaatatcaaagtagttgacggg
caacttgttgaaactctacaacaactcccacgaggaactcgtgatggtgattttcttgat
gctataattgttgggatggatatgctgataaagaaatacggagaaacatataaaggaaag
aaacgtctttgtctgcttactaatgcacaattccctattaaatatccgctagaaggaact
aaagaagatcaagtcagcaccattgctgaacacatgaatacacatggtatgagaatggaa
agtatagttgtaagaggaagtcttactggggaagcaaataaaagcgtaatggatgagaat
gataatctattgggtatattttcaaagaagacatgtgcgaagttagtgcatgttgagagt
ccaacttcattgctaggtgctctcagaactcgaaaaatatctccagttacaatattcagg
ggtgatcttgagcttagccccaaaatgaagattaaggtatgnnnnnnnnnnaaagcatcg
gaatagaagtttcccgctctgaagaaatattctgataaagcgcctccaactgataaattt
gctacacatgaagtcaaagtggactttgagtacaaaagtgttgaagatcctaataaagtt
gtaccaccagatcagaggattaagggttatcgttatggccctcaagttattcccatatca
tctgctgaatgggatgctgtcaagttcaaaccagaaaaaagtgtgaagcttctgggattt
tctgatgctaaaaacataatgcgacactattacatgaaagatgtcaatgttttcatccct
gaaccgggtaatacaagagccattcttgctgtttctgccctagcaagagctatgcaagat
atgaataaggtggcaattttgcgttgtgtttggagacaaggacaagggaatgttgttgtt
ggggtcttgacacctaatgtctctgacaatgataatattcctgattcattttacttcaat
gtgctcccttttgctgaggatgttcgagaatttcaattcccttctttcaataactttcca
gcatcatggcaaccaaatgaacagcagcaagaggctgcagatgactttgtcaggatgttt
gatcttgcaccacctggcaaagaagaggctctgcaacctgacctaactccaaatcctgtt
cttgagcgcttttatcgtcatcttgagttgagatcaaggcacccagatgcagctgtgcct
ccactcgatgaaactctcaggatgattactgaacctgataaagagttgctttctcaaaac
agatctgttcttgatgtatttcgcagccgttttgaagtcaaagagaatccaaagctgaag
aaatcaagtaggcgatttttacgagacaagccatctgggtcaaatgagggtcatgctgac
atttctgatgaacctaaatccagcggatatacttctgctgttaaggttgagaaagttggg
gatgctactcctgtccaggattttgaagctatgatcaatcgtagagatagcccacagtgg
gttggcaaagcaattaaggatatgaaaaacaaaatacacgacttagtagaggactcttat
gaaggggataattatcccaaggcactggaatgcttaattgccctccgcaagggttgcatc
ctagagcaagaaccgaaacagttcaatgattttctgcgcactctatgtatattctgccag
gagaaagccctcagcagtttctgtgaatttcttgcatccaaagagctcaccttgatttca
aagacagaagctatagacagtgaagttacggatgatgaagctaggaattttctggtcaaa
tcagagccaaagttggaatgaaacccaaattttgtttcaagatgtggggtttga
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