Prunus mume (Japanese apricot): 103331888
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Entry
103331888 CDS
T03196
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103331888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmum03019
]
103331888
03036 Chromosome and associated proteins [BR:
pmum03036
]
103331888
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103331888
Messenger RNA biogenesis [BR:
pmum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103331888
mRNA degradation factors
5'-3' decay
Decapping complex
103331888
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103331888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
TFIIA
Motif
Other DBs
NCBI-GeneID:
103331888
NCBI-ProteinID:
XP_008232788
LinkDB
All DBs
Position
LG5:complement(15833453..15839475)
Genome browser
AA seq
499 aa
AA seq
DB search
MNSNRGRYPPGIGAGRGGGMNANPAFQSRPPHQQQYVQRNLLPNHHHQQYFQQQQHQQQQ
QQQQQWLRRGQLGGSTSADSAVDEVEKTVQSEAVDPSSHDWKARLNIPAPDTRFRTEDVT
ATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFC
IPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRL
YQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPSHRQ
ILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKL
QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD
LFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE
LGTEIKQIPPHIDQAIYCR
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtaacagagggaggtaccctccggggatcggagctgggagaggtggtggcatg
aatgcaaaccctgcatttcagtctcgaccaccgcatcagcaacagtatgtacagaggaac
cttttgccgaaccatcatcatcagcagtactttcagcaacagcagcatcaacagcagcag
cagcaacaacaacagtggctcaggagaggtcagttgggtgggagtaccagtgctgattcg
gccgttgatgaggtcgagaagacagtgcagtcggaagctgtcgacccgagttcgcatgat
tggaaggcgaggttaaatattccagcacctgatactcgcttcagaacagaggatgtaact
gcaactaaaggaaacgagtttgaggactattttctgaaacgtgagctgctgatgggaatt
tatgagaagggatttgaaagaccatcccctattcaggaagaaagtatcccaattgcttta
actggtagtgatattcttgctagagctaaaaatggaacggggaaaacagctgcattttgc
atccctgctttggagaaaattgatcaagataacaatgtaatacaagttgttattcttgtt
ccaactcgcgagttggctcttcaaacatcacaagtctgtaaggagctagggaagcatttg
caaattcaagttatggttacaaccggaggtaccagcttaaaggatgatatcatgcgttta
tatcaaccagttcacttgcttgtcggaactcctggaagaattttagatcttgcaaagaaa
ggtgtttgcatcttgaaagattgttctatgcttgttatggatgaggccgataagcttttg
tccccggagtttcaaccttcagtagagcagctgatccgcttcttaccttcacatcgacaa
attttgatgttttcagctacatttcctgttactgtcaaggacttcaaggatagatatctg
caaaaaccttatgttatcaaccttatggatgagcttactctaaagggtattacacaattt
tacgcctttgtcgaggagagacagaaagtccactgcctaaacactcttttctctaagctt
caaataaatcagtcaatcatattctgtaattctgtgaatcgggtagagttgttggccaag
aaaattacagaacttggctattcttgtttttatatccatgcaaagatgctgcaagaccat
cgtaacagagtatttcatgacttccgtaatggtgcatgcagaaatcttgtttgtactgat
ctatttacaagaggaatagatattcaagcagtcaatgttgtcattaactttgattttcca
aagaactcagagacatatcttcacagggttggtcgatctggaaggtttggacaccttggt
ttagctgtgaatttgatcacctatgaagaccgcttcaacttgtatagaattgagcaagaa
cttggaactgagatcaagcaaattcctccccatatcgatcaggcaatttattgccggtga
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