Prunus mume (Japanese apricot): 103332244
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Entry
103332244 CDS
T03196
Name
(RefSeq) cyclic nucleotide-gated ion channel 1-like
KO
K05391
cyclic nucleotide gated channel, plant
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
103332244
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pmum04040
]
103332244
Ion channels [BR:
pmum04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
103332244
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
103332244
NCBI-ProteinID:
XP_008233189
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All DBs
Position
LG5:complement(17978626..17983710)
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AA seq
721 aa
AA seq
DB search
MTSVGHKFVRFEDWHPDRSVSSEHEASTGHGLNPRRARPSVNAVLRGLRRGLERGSDRIR
SLKKPLGSTSVGNWSARESGSRRKILDPQGSFLQNWNKIFVITCVIAVSLDPLFLYTAVV
DGEHMVVDWDQRLQIITCVLRSFTDVFHILHIIFQFRTGFIAPSSRVFGRGELIDDPVAI
AKRYLSSYFIIDILAIFPLPQMVVFFRIPISRPVPHVTKDLLLIVIVAQYGPRLWRIYPL
YKEVTRTSGFLTETAWAGAAYNLLLYMLASHVVGAFWYLFSVEQEYSCWRNQFHGNDFCK
KVLYCDPKYKADSSLIEKLNGSCPFIGPDQIKNSTVFNFGIFTDALQSGVLETGDFPKKF
LYCFWWGLRNLSSFGQNLKTSTFVWEIVFAVFISIFGLVLFSLLIGNMQKFLQSTTVRVE
EMRVKRRDAEQWMSHRMLPENLRERIRCYDQYKWQETRGVEEETLVRNLPKDLRKDIKRH
LCLALLNRVPIFEKMDEQLMDALCDRLKPVLYTDKSVITREGDPVDEMLFIMRGYLATMT
TNGGRTGFFNTADLKAGDFCGEELLTWALDPNSSTNLPISTRTVEAKTEVEAFALMADDL
KFVASQFRRLHSKQLQHTFRFYSLQWRTWSACFIQAAWRRHCKRKLEKSLREAEDRLQDA
LTREAGSSPSLLATVYASKFAAHALRNLRQNGKCDTRPSPTLLPLLPQKPTEPDFTADHH
D
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgacttccgtggggcataagtttgtaaggtttgaagattggcatccggatcgatctgta
agctctgagcacgaagcttccactggtcatggactaaatccaagaagagctagaccatct
gtgaatgcagttcttaggggtctccggagaggattagagaggggttctgatcggattaga
agcttgaaaaaaccactaggttccacttctgtaggtaactggtcagcaagggagtcaggc
tctaggaggaaaattcttgaccctcaggggtcatttcttcagaactggaacaagatattt
gtgatcacctgtgttatagctgtgtccttggacccgttgtttctttatactgcagtggtt
gatggggaacatatggtcgtggattgggaccaaaggttgcagatcattacctgtgttctt
cgttccttcaccgatgtctttcacatacttcatatcatctttcagtttcgcactggtttt
attgccccctcttctcgagtattcggaaggggtgagctaattgacgatcctgtggccatt
gcaaaaagatacttgtcctcatacttcatcattgacattctagctatttttcctctgcca
cagatggttgttttttttagaattccaatatcacgtccagttccccatgtcacaaaggac
ttgttgctgattgtaattgttgcccaatatgggccaaggctttggcggatctatccatta
tacaaagaagtaacaagaacttcaggcttcctgactgaaacagcatgggctggagctgct
tacaatcttttgctctacatgctagccagtcacgtagttggagccttttggtacttgttc
tccgtggaacaagagtatagctgctggcgtaatcagtttcacgggaatgatttttgtaag
aaagtcctgtactgtgatcctaagtataaagctgactctagcttgattgagaagttaaat
ggttcttgcccttttattggccctgatcaaataaaaaattcaacggtgttcaactttgga
atatttactgatgctctgcagtctggtgtgctagagaccggagattttccaaagaaattt
ttatactgcttctggtggggtctgcgcaaccttagttcttttggtcaaaaccttaaaaca
agcacttttgtttgggagatagtctttgccgtgttcatatctatctttggattggtgcta
ttttcattgctcattggcaatatgcagaaatttctgcagtccacaactgtgagagttgaa
gaaatgagagtgaaaaggcgagatgcagaacagtggatgtcacaccgaatgctccccgag
aacttgagggaaaggattagatgctatgatcagtataaatggcaagaaacaagaggtgtt
gaggaagaaactctagttcgtaaccttcccaaagacctgcggaaggacataaagcgccat
ctttgcttggctcttctcaatagagtgccaatatttgagaaaatggatgaacaactgatg
gacgcactgtgcgatcgtctcaagccagttctttacacagacaagagtgttatcactcga
gaaggcgatccagttgatgagatgctatttatcatgcgtggatatttagcaactatgact
accaatggtggaagaactggcttcttcaacactgctgatcttaaggctggtgacttttgt
ggagaagagcttcttacatgggccttggatccaaactcctccaccaatcttcccatctca
actaggacagtggaagctaaaacagaagttgaagcctttgctctcatggctgatgatttg
aagtttgttgcctcccagtttcggcgcctacacagcaagcagctccagcacactttcagg
ttttactccctgcagtggaggacatggtcagcctgtttcatacaagcagcttggcgcagg
cactgcaagagaaagcttgagaagtctttacgtgaagcagaagacaggctgcaagatgct
ttgacaagagaagctggaagctcaccaagcctacttgccactgtatatgcatcaaagttt
gcagcccatgcactacgaaacttgcgacaaaatggtaagtgcgacactagaccttcaccg
acattgctgccactgctgcctcagaagcccaccgagcctgattttaccgcagatcatcat
gactag
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