Prunus mume (Japanese apricot): 103332580
Help
Entry
103332580 CDS
T03196
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
pmum
Prunus mume (Japanese apricot)
Pathway
pmum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103332580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmum03021
]
103332580
03041 Spliceosome [BR:
pmum03041
]
103332580
03036 Chromosome and associated proteins [BR:
pmum03036
]
103332580
Transcription machinery [BR:
pmum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
103332580
Spliceosome [BR:
pmum03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
103332580
Complex B
103332580
Complex C
U2 SnRNP specific factors
103332580
Chromosome and associated proteins [BR:
pmum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
103332580
TFTC complex
103332580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
103332580
NCBI-ProteinID:
XP_008233546
LinkDB
All DBs
Position
LG5:complement(20233256..20238356)
Genome browser
AA seq
1212 aa
AA seq
DB search
MYLYSLTLQRATGIVCAINGNFSGGKAQEIVVARGKVLDLIRPDENGKIQTLLSVEIFGV
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMVGACEKQKLVYVLNRDTSARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGQAANEAQKHLTFYELDLGLNHVSRKWSDQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQDKPDLRAVIPRRADLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLDHDNDKVSELKIKYFDTIPVTTSMCVLKSGFLFAASEFGNHSLYQFRAI
GEDPDVESSSATLMETEEGFQPLFFQPRRLKNLVRIDQVESLMPIMDMKVNNLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNVSDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSIPESLLFLEVQASIGGEDGADHPASLFL
NAGLRTGILFRTVVDMVTGQLSDSRSRFLGLRAPKLFSVSVRGKHAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGNALRVFTIERLGETFNETVVPLRYTP
RKFVVQLKRKLLVIIESDQGAFTAEEREAAKKECFEAAGIGENGNGNVDQMENGGDNEDD
PLSDEHYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAFSICTVNFHDKEYGTLL
AVGTAKGLQFWPKRSVTAGYIHIYRFLDDGKSLELLHKTQVDGVPLALCQFQGRLLAGIG
PVLRLYDLGKKRLLRKCENKLFPNSIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIF
ADDCVPRWLTASYHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGRIKWEQGKLNG
APNKVEEIVQFHVGDVVSCVQKASLIPGGGECIIYGTVMGSLGALLAFTSRDDVDFFSHL
EMYMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEI
LKKLEEIRNKII
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgtatctttacagcctcactcttcagcgagcgacgggcatagtctgtgccatcaatggc
aatttctccggcggaaaggcccaagagattgtcgtcgccagaggcaaagttctcgacctt
attcgacccgacgaaaatggtaagatccagactctactctctgttgaaattttcggcgtc
attaggtctttagctcagtttaggctcactggttctcagaaagactatattgttgttggg
tccgattcgggtcgaatagtaattcttgagtataacaaggaaaagaatgtctttgataaa
gtccaccaagaaactttcggtaagtcgggttgtcgccggatagttccgggccagtatttg
gccattgaccccaaggggagggctgttatggttggggcctgtgaaaagcagaagcttgtt
tacgttttgaatagggatacatctgcaaggttaactatatcatcccccttggaggcccac
aagtcgcatactattgtgtattcaatttgtggggttgattgtgggtttgataaccccata
tttgctgccattgagttggattattcagaagccgatcaggactctactgggcaggcggca
aacgaggctcagaagcatttgactttctacgagctcgaccttgggcttaaccatgtatct
aggaagtggtcggatcaggttgataatggtgcaaatttactggtcacagttcctggaggt
ggggatgggccaagtggtgtattggtctgtgcggaaaattttgtgatttacaagaatcag
gataaaccggatcttagggccgtgattcctaggcgtgcagatttgccagctgagcgtggg
gttcttatagtttcagcagctatgcacaagcagaagtcaatgttctttttccttttgcag
acagagtatggggatatatttaaggttactctggaccatgataatgacaaggtctcagaa
ttgaagataaaatattttgatacaattccagttacaacttcaatgtgtgtgttaaaatct
gggtttttgtttgctgcgtcagagtttgggaatcactctttgtaccagttccgagcaata
ggtgaagatcctgatgtggagtcttcctcagctacattgatggaaactgaagaaggtttc
caacctttgtttttccagcctagaagacttaagaaccttgttaggattgatcaggttgag
agcttaatgccgataatggatatgaaggtcaataatctctttgaggaagaaacacctcaa
atatttacactttgtgggcggggccctcgttcatccctcaggattctaaggcccggttta
gctatcagtgagatggctgtgtcagagcttccaggtgtaccgagtgcagtctggacagta
aaaaagaatgtatctgatgagtttgatgcatacattgtggtgtcatttgcaaatgctacc
cttgtgctttcaattggtgagactgtggaagaagttagtgacagtgggtttcttgacact
accccatcacttgcagtttctttgataggtgatgattctctcatgcaagttcacccaaat
ggaattaggcatattagggaagatggacgtattaatgaatggagaactcctggaaagaga
acgatcgtcaaggttggctctaatagacttcaagtggttattgctctgagcggcggagaa
cttatatattttgaagttgatatgacgggtcaattgatggaggtggagaagcatgaaatg
tctggtgatgtagcttgtctggacattgcccctgtacctgaagggagacagagatctcgt
ttccttgcagttggttcatatgacaacactattcgtattttgtcattggatcctgatgac
tgtatgcagattctgagtgtgcaaagtgtttcttcaattccagaatctctcctatttctt
gaggttcaggcatcaattggtggggaggatggtgctgaccatcctgccagccttttcctt
aatgctggtttacgtactgggattctgttcaggacagtggtagatatggtgacaggtcag
ctttctgattcccgttcacgattcttaggactaagagctccgaagctattttctgttagt
gtgagaggcaagcatgccatgctttgtttgtcaagtcgaccctggctcggttatattcat
caaggacattttctgttaacacccctatcttatgagacacttgaatatgccgcctcattt
tcatctgatcaatgtgcggaaggtgtagttgctgttgctggaaatgctttgagggttttt
actattgaaaggttgggagaaacctttaacgaaactgtggttccactgaggtacactccc
agaaagtttgttgttcaactcaaacgaaagcttttagtaattattgaaagtgatcaagga
gcattcacagcagaagagcgtgaagctgcaaaaaaggagtgctttgaggctgcaggaatt
ggtgaaaatggaaatggtaatgttgatcagatggaaaatggtggtgataatgaggatgat
cccctctccgatgagcactacggctatcctaaggcagagtctgagaaatgggtttcttgc
attagagttcttgaccccaagacagcaactacaacttgtctgctggagcttcaggataac
gaagctgcattcagtatatgcacagtgaatttccacgacaaggagtatggtacgctttta
gctgtcggtacagcaaagggactgcagttttggcccaaaagaagtgtaacggcagggtat
attcatatctatagatttctagatgatggaaagtcccttgaacttttgcacaagacacaa
gtggatggtgttcctcttgctttatgccagtttcagggaagattactagcaggcatagga
ccagtgctcagactgtatgatttggggaaaaaaagattgcttagaaaatgtgagaataag
ctgtttcccaactccattatatctattcaaacctatcgtgataggatttacgtaggtgac
attcaagagtcatttcactactgcaagtacagacgggatgagaatcagttgtatatcttt
gctgatgattgtgttccaagatggcttacagcgtcatatcatatagattttgacaccatg
gcaggtgcagacaagtttggaaatgtctattttgtgcggttaccacaggatgtttcagat
gagatagaagaggatccaacaggtgggaggataaaatgggagcaggggaagttgaatggc
gctcccaacaaagtagaggagatagtgcagtttcatgttggtgatgtggtcagctgtgtg
cagaaggcatctctaattccaggtggtggggaatgcatcatctatgggacagtgatgggt
agcttgggtgcattgcttgcattcacctctcgtgatgatgttgacttcttttctcacctg
gagatgtatatgaggcaggagcatccgcccttgtgtggtagagatcacatggcttataga
tcagcttattttccggttaaggatgtgattgatggagatctgtgcgagcagttcccaaca
ttgcctatggatctgcagagaaaaattgcggatgagttggatagaactcctggagagata
ctgaagaaacttgaggaaattcgaaataagatcatttaa
DBGET
integrated database retrieval system
