Prunus mume (Japanese apricot): 103332831
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Entry
103332831 CDS
T03196
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmum03009
]
103332831
Enzymes [BR:
pmum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103332831
Ribosome biogenesis [BR:
pmum03009
]
Eukaryotic type
Pre-60S particles
Helicases
103332831
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
RNA_pol_Rpc4
Motif
Other DBs
NCBI-GeneID:
103332831
NCBI-ProteinID:
XP_008233812
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All DBs
Position
LG5:complement(21546596..21550415)
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AA seq
595 aa
AA seq
DB search
MDADSFNPNSALSDTRFSDLKPPLSEPVLEALARALARGGFGFCPPVQAATIPLLCRFKD
VAVDAATGSGKTLAFVVPLVEILRRASTVPKPQQVMGMIISPTRELSSQIYNVAKPFIST
LPNFKCVLLVGGGQVKADTKQIEEEGANLLIGTPGRLYDIMERMDGLDLRDLEILILDEA
DRLLDMGFQKQINDIMSRLPKLRRTGLFSATQTEAVEELARAGLRNPVRVEVRAETKSNN
SALSQQLASSKTPSGLAIEYLECEADKKPSQLVDLLVKNKSNKTIVYFMTCACVDYWGLV
LPLLGSLKGFPLIALHGKMKQAARDKALASFTSLSSGILLCTDVAARGLDIPGVDCIVQY
DTPQDPNVFIHRVGRTARMGRQGSAIVFLLPKEEAYVEFLRIRRVPLQERKCSDDVSDVI
PPIRSAAKKDRDVMEKGLRAFVSYIRAYKEHHCSYIFRWKELEIGKLGMGFGLLQLPAMP
EVKHHSLSTEGFIPVKDINLEEIKFKDKSREKQRKKNLQAKKEAKKQEVKPQKPNKSAND
TAAQMRKKTAKQRRAAQTVEDEDELAREYRLLKKLKRGDIDESQFAKLTGTEDLL
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgactctttcaaccccaacagcgcgctaagcgacacgcgcttctccgacctg
aagccgccactctccgagccggtcctcgaagccctagcccgagccctggcccggggcggg
ttcgggttctgcccgccggttcaagccgccacaatccccttactatgcaggttcaaggac
gtggcggtggacgccgctaccggctcgggcaaaaccctagccttcgtggttccactggtg
gagatactccgacgagcttcaaccgttccaaaacctcagcaggtgatgggaatgattata
tctccgactagggagctgtcttcgcaaatatacaacgtggcaaaacccttcatttcgacg
ctgccgaatttcaagtgtgtgcttttggttggtggagggcaagtgaaagcagacacgaag
caaatagaggaggaaggagccaatttgttgattggcactccggggagactatacgacatt
atggaacgcatggatggcttggatttgcgagaccttgagattttgattttagatgaggct
gataggctcttggatatgggtttccagaagcagataaatgatattatgtctcgcctgcca
aagcttcgtagaactggtctcttttcagctacccaaactgaggcagttgaagagctggcc
agagcaggactaaggaatcctgtgagagtcgaagtacgagcagaaacaaaatcgaataat
tcggcattgtcgcaacagttagcctcttcaaaaacaccttctggccttgccattgagtat
ctagagtgcgaggcagacaagaaaccgtcacaacttgtggatctccttgttaagaataag
tctaacaagaccatagtatacttcatgacttgtgcttgcgttgactactggggacttgtt
cttccattgcttggttctttaaagggtttccctttgattgctctacatgggaagatgaag
caggctgcaagggacaaagctttagcctcatttacatctctctcaagtggcatccttcta
tgtactgatgttgcagctcgtggactcgatattccaggtgttgactgtatagtgcagtat
gatacccctcaagatccaaatgttttcatacatagagttggccgaacagctcgtatgggt
agacaaggaagtgctatcgtttttctgttgccaaaggaggaagcttatgtagaattcctg
cggataagaagagtgcctcttcaagaaaggaaatgttctgatgatgtttctgatgttatt
cctccgatacgatctgccgcaaaaaaggaccgtgatgtcatggaaaagggactcagggca
tttgtttcttacatccgtgcatataaagaacaccactgctcttacattttcaggtggaaa
gaacttgaaattgggaaactgggcatgggattcggactactgcagctccctgcaatgcct
gaggtcaagcaccactctctttccacagagggtttcatccctgttaaagacatcaacttg
gaggagatcaagtttaaggataaatctcgtgagaagcaaagaaagaagaatctgcaagca
aagaaagaagcaaaaaagcaagaagttaaacctcaaaaacccaacaaaagcgcaaatgat
acagctgctcagatgaggaagaaaacagctaagcaaagacgtgctgcccagacagttgaa
gatgaagatgagttggcaagagaataccgcttgctaaagaagctcaaaaggggggatatt
gacgaaagtcaatttgcgaagttaacaggaacggaagacttactttga
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