Prunus mume (Japanese apricot): 103333049
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Entry
103333049 CDS
T03196
Name
(RefSeq) LOW QUALITY PROTEIN: lethal(2) giant larvae protein homolog SRO77-like
KO
K08518
syntaxin-binding protein 5
Organism
pmum
Prunus mume (Japanese apricot)
Brite
KEGG Orthology (KO) [BR:
pmum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmum04131
]
103333049
Membrane trafficking [BR:
pmum04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
103333049
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
103333049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_EML_2
ANAPC4_WD40
WD40_WDHD1_1st
WD40_Prp19
WD40
Beta-prop_RIG_2nd
WDR55
EIF3I
NBCH_WD40
DUF421
YMR265C_C
Motif
Other DBs
NCBI-GeneID:
103333049
NCBI-ProteinID:
XP_016650253
LinkDB
All DBs
Position
LG5:21484593..21491339
Genome browser
AA seq
933 aa
AA seq
DB search
MFAKLFNKSSPQAASHPRARVRQADLDPRVTVHYGIPSPASILALDRTQSLLAIGTLDGR
IKVIGGDNNQELLTSPKPLPFKNLEFLQNQGFLASVSSENEIQVWDLEQRRIASSLQWEC
NITAFSVIYGTNYMYIGSECAIVSVLKYDVDDGKIKLLPYYITANFIDEAAGMSLPDHLS
VVGVLHQPNSLGNRLLIAYENGLIILWDASEDRVVLVRGSKDLKVKEKTVTSSPKDTRNE
VSDATEESNQVEKEISSLCWVSDNGSILAVGYVDGDIMFWDLSTAASTKDQKSEEXDNNV
AKLQLSSGDRRLPVIVLHWSANKLHKHHRGQLFVYGGDEIGSQEVLTVLSLDWSSRIESL
KCISRTDLTLNGSFVDMALLPTAAAMESSDTLLFILTNQGQLQVYDKACLSALMSQQQEK
TAVPAVEYPMFIPTIEPYMTVAKLALVNTDKECSSALSKQILVGKINAEDTSTTGGTKWP
LTGGVPSQLNDAENYHVERVYVAGYQDGSVRIWDATYPALSLICALGSEVKGIRSTVASA
TVSALDFCSVSLRLAVGDECGLVRLYKIIGGSDGTRLHFVTTTEREVHDLQQGKGPQCMA
VFSILDSPICILQFANFGGRLAVGFECGRVAMLDISTLSVLLDSVSNSSSPVICLAMKSF
SDTSSSLQSPRIWVIQEMLTFIMTRNGHIVVIDSSSGNMISSWPMHSQQESTAVSMHVIE
DGDVLCDVLSEKHSLEVSPRNEAKSDHAQTSADSASTQLDVEPDTSRETAYFAQRLLNVS
VLLCCENTLQLCSLKSLLEGDGNSTQEFDLVKPCCWTTVFKKDGKNGGLIVFYQTGVFEI
RSLPNLEVVGELSLMSILRWNFKTNMDKTICSSDHGQIILVNGCELAFLSLSSDENEFRI
PESLPCLHDKVIAAATDVTKFYFISCLLNLKHV
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgtttgctaagctcttcaacaagtcatcgccacaagcagcttcacatcctcgggcaagg
gtcagacaagcggatttggatccgcgcgtcacggttcactatgggataccatcccctgca
tccattctcgctctcgatcgcacacaaagcctgttggcaattggaactctggatggtagg
ataaaagtgataggtggtgataataaccaagagcttcttacatctccaaagccgttgcct
tttaaaaatttagagttcttacaaaatcaaggttttctagccagtgtctcaagtgaaaat
gaaattcaggtttgggatttggaacagaggcgcatagcttcttctttacagtgggaatgc
aatataactgctttctctgttatttatggcaccaattacatgtacattggaagcgaatgt
gcaatcgtctctgttctgaagtatgatgttgatgatggaaaaattaagttattgccatat
tatattactgcgaatttcatagatgaagcagctggaatgtcattgcctgatcatctttct
gttgttggagttctccatcaacctaactctttgggaaacaggctgctgattgcatatgaa
aatgggttgatcattctctgggatgcttcagaagatcgagttgttcttgttagaggttcc
aaggacctgaaagtgaaggaaaaaacagtcactagttctccaaaagacacaagaaatgag
gtttctgatgctacagaagaaagcaaccaggtggagaaagagataagctctctttgttgg
gtatctgataatgggtcaattcttgcagttggctatgtagatggtgatataatgttttgg
gacttatcaactgctgcctctaccaaggatcagaaatctgaggaatgagataacaatgtt
gcaaagcttcagttatcatcaggtgatagaagactccccgtaattgttttgcactggtct
gcaaataaattacataaacatcataggggccaactctttgtctatggtggtgatgaaatt
gggtctcaagaagttctgacggttctaagccttgattggtcttcaagaatagaaagtctg
aaatgcataagccgtacagaccttacacttaatggttcctttgtggatatggctttatta
ccgactgctgctgcaatggagagtagcgacacattgctattcattttgacaaatcaagga
caactgcaagtctatgacaaggcttgcttgtctgctttaatgtctcaacaacaggaaaag
actgctgttccagcagtggagtatcctatgttcatacccactattgagccatacatgaca
gtggcaaagcttgctctggtgaatacagataaggaatgctcctcagctctgtctaagcaa
atcttagttggaaagattaatgcggaggacacttcaacgactggcggtacaaagtggcct
ttgactggtggtgttcccagccagcttaatgatgctgaaaattatcatgttgagagagta
tatgtagcaggataccaagatggatcggttcgaatatgggatgccacatatccagctctg
tcacttatctgtgctctaggatctgaggtaaaaggcatcagatctacagttgcaagtgca
acagtatcagcattggatttttgttctgtttctttacgattagctgttggtgatgaatgt
ggtctggttcgtctgtataagataatagggggttcagacggaacaagattgcactttgtg
acaacaactgagagggaagtacatgatttacaacaagggaaggggcctcagtgcatggcc
gtgttttctattcttgattctcctatatgcatcctacaatttgcaaattttggaggcaga
cttgctgtgggatttgaatgtggccgggttgccatgcttgatattagtacattgtcagtt
ttgttagacagtgtatccaactcaagttccccagtgatctgtctggctatgaaatcattt
tcggatactagtagctcattacagagtccaagaatttgggtgatccaggaaatgttgaca
ttcattatgaccagaaatggacatattgttgtcattgacagttcctctggcaatatgatt
agctcttggccaatgcattcacaacaggagtctactgcggtttcaatgcacgttattgag
gatggcgatgttttatgcgatgtgttgagtgaaaaacattcgttggaagtatctccaagg
aatgaagcaaaaagcgatcatgcacaaaccagtgctgactctgcaagtacacagcttgat
gttgaaccggacacctccagagaaactgcatattttgcacagaggttattgaacgtatct
gttttactttgttgtgagaacacattacagttgtgctcattgaagtctcttcttgagggt
gacggtaactccactcaagagttcgatcttgtaaaaccatgttgttggactacagtcttt
aagaaagatgggaaaaatggtggactgattgtattctatcaaacaggagtctttgaaata
aggtctttgccaaatcttgaagtggtaggagaattgtcattaatgtcaattctaagatgg
aacttcaagaccaacatggacaagacaatatgttcctcagatcatgggcaaattattctg
gtaaatgggtgtgaattagcttttctatctctttcgtctgatgaaaatgaattcaggatt
ccggagtcgttgccttgtcttcatgataaagtgattgcagctgctacagatgtcactaaa
ttttattttatctcttgcttgctgaacctgaaacatgtttag
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